Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609441

Identifier: 86609441

GI number: 86609441

Start: 2098003

End: 2098731

Strand: Direct

Name: 86609441

Synonym: CYB_1992

Alternate gene names: NA

Gene position: 2098003-2098731 (Clockwise)

Preceding gene: 86609440

Following gene: 86609442

Centisome position: 68.86

GC content: 60.91

Gene sequence:

>729_bases
GTGAGCGATTCTTTGGATGTCCAGGCTCCTCTGCCCGCCATTTTGGCCGATCTGCAAAAAGCCCTGGGATCCCTGGGGTT
GGGTTATCTCCAGGTACAAGCGCGGCTTTCCGGCCACCGCCTGTTGCTGCGCCTAGAGGGGGATCCCTTGCCTGAGCCGG
ATGCTTTGCTGGGGAGCCTCTCGCCGGCCTTGGAGCAAATGGCGCTGACCCACAGGCAGCGTCAGGTGGAGCTGTTTGGC
TTTCTGGCCAATGAAGGGATCCCGGAATGGCACTGCGAGTGGCGCTACCAGCCCCAGCCCAACCCCAACAGCCCTCTGTA
TCGCGCTCAGCGGGGGGATGAGGTGGCCATCCAGCAGGTGTTCAATTACCTGTTGCGTCCGGAAGGGATCCAAGCACGGG
TTCATTTCCATCCCAAACTGGGCCTCCTGCAGGTGAACTTGCAGGCGGCAGAAGCCCCGGATCCGGATTGGGCTAGGGAT
TTTCTGCGGCGAGCCTTGACCCGTCTGGAATGGACTTTCTTGCAAAGGCTGCGGCTTTCCGGGCAAAAACTGGGCTCCTT
TTTCCCGGCCTGGAGCCAGGAGTTCGATCTCAAACAGCCCGCCTTTTGGCAGTCCCCGCAGGTGCCCTTGACCGGGCGAT
CCCCCATCTCAGAGAGAGAAATCTCTCCGCTGGATAAGCCGCCACCCCCTTCTCCTGCCTCCCAGACTGAATCTCCGGGT
GTCAGTTGA

Upstream 100 bases:

>100_bases
AGCAGAATGGATCTGGCCATCTTGGCCGGCGATCCCAGGGATCCAAGCAACCTTGGAAATTGGCTAGGTTGGGTTAGGGC
TTGTTGGAGATCTTTTGTCG

Downstream 100 bases:

>100_bases
CGGAGGAGATAGTAAGTAGCCGAGCGTTTGCAGCCGCTGGCTGAGCGTATTCTGAAGGACAGTGCTCGTTGGGGTTGGCC
ATGCGGGTTGTTTTTTTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFG
FLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARD
FLRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG
VS

Sequences:

>Translated_242_residues
MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFG
FLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARD
FLRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG
VS
>Mature_241_residues
SDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFGF
LANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDF
LRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPGV
S

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27199; Mature: 27068

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSL
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEECCCEEEEEECCCCCCCHHHHHHHH
SPALEQMALTHRQRQVELFGFLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCCCCCCEECCCCCHHHHHHH
FNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDFLRRALTRLEWTFLQRLRLS
HHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VS
CC
>Mature Secondary Structure 
SDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSL
CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEECCCEEEEEECCCCCCCHHHHHHHH
SPALEQMALTHRQRQVELFGFLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCCCCCCEECCCCCHHHHHHH
FNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDFLRRALTRLEWTFLQRLRLS
HHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
VS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA