| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609441
Identifier: 86609441
GI number: 86609441
Start: 2098003
End: 2098731
Strand: Direct
Name: 86609441
Synonym: CYB_1992
Alternate gene names: NA
Gene position: 2098003-2098731 (Clockwise)
Preceding gene: 86609440
Following gene: 86609442
Centisome position: 68.86
GC content: 60.91
Gene sequence:
>729_bases GTGAGCGATTCTTTGGATGTCCAGGCTCCTCTGCCCGCCATTTTGGCCGATCTGCAAAAAGCCCTGGGATCCCTGGGGTT GGGTTATCTCCAGGTACAAGCGCGGCTTTCCGGCCACCGCCTGTTGCTGCGCCTAGAGGGGGATCCCTTGCCTGAGCCGG ATGCTTTGCTGGGGAGCCTCTCGCCGGCCTTGGAGCAAATGGCGCTGACCCACAGGCAGCGTCAGGTGGAGCTGTTTGGC TTTCTGGCCAATGAAGGGATCCCGGAATGGCACTGCGAGTGGCGCTACCAGCCCCAGCCCAACCCCAACAGCCCTCTGTA TCGCGCTCAGCGGGGGGATGAGGTGGCCATCCAGCAGGTGTTCAATTACCTGTTGCGTCCGGAAGGGATCCAAGCACGGG TTCATTTCCATCCCAAACTGGGCCTCCTGCAGGTGAACTTGCAGGCGGCAGAAGCCCCGGATCCGGATTGGGCTAGGGAT TTTCTGCGGCGAGCCTTGACCCGTCTGGAATGGACTTTCTTGCAAAGGCTGCGGCTTTCCGGGCAAAAACTGGGCTCCTT TTTCCCGGCCTGGAGCCAGGAGTTCGATCTCAAACAGCCCGCCTTTTGGCAGTCCCCGCAGGTGCCCTTGACCGGGCGAT CCCCCATCTCAGAGAGAGAAATCTCTCCGCTGGATAAGCCGCCACCCCCTTCTCCTGCCTCCCAGACTGAATCTCCGGGT GTCAGTTGA
Upstream 100 bases:
>100_bases AGCAGAATGGATCTGGCCATCTTGGCCGGCGATCCCAGGGATCCAAGCAACCTTGGAAATTGGCTAGGTTGGGTTAGGGC TTGTTGGAGATCTTTTGTCG
Downstream 100 bases:
>100_bases CGGAGGAGATAGTAAGTAGCCGAGCGTTTGCAGCCGCTGGCTGAGCGTATTCTGAAGGACAGTGCTCGTTGGGGTTGGCC ATGCGGGTTGTTTTTTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFG FLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARD FLRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG VS
Sequences:
>Translated_242_residues MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFG FLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARD FLRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG VS >Mature_241_residues SDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSLSPALEQMALTHRQRQVELFGF LANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQVFNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDF LRRALTRLEWTFLQRLRLSGQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPGV S
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27199; Mature: 27068
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSL CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEECCCEEEEEECCCCCCCHHHHHHHH SPALEQMALTHRQRQVELFGFLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCCCCCCEECCCCCHHHHHHH FNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDFLRRALTRLEWTFLQRLRLS HHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VS CC >Mature Secondary Structure SDSLDVQAPLPAILADLQKALGSLGLGYLQVQARLSGHRLLLRLEGDPLPEPDALLGSL CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEEEECCCEEEEEECCCCCCCHHHHHHHH SPALEQMALTHRQRQVELFGFLANEGIPEWHCEWRYQPQPNPNSPLYRAQRGDEVAIQQV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECEEECCCCCCCCCCEECCCCCHHHHHHH FNYLLRPEGIQARVHFHPKLGLLQVNLQAAEAPDPDWARDFLRRALTRLEWTFLQRLRLS HHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GQKLGSFFPAWSQEFDLKQPAFWQSPQVPLTGRSPISEREISPLDKPPPPSPASQTESPG HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA