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The map label for this gene is ychA [C]

Identifier: 86609312

GI number: 86609312

Start: 1939145

End: 1939984

Strand: Reverse

Name: ychA [C]

Synonym: CYB_1856

Alternate gene names: 86609312

Gene position: 1939984-1939145 (Counterclockwise)

Preceding gene: 86609313

Following gene: 86609308

Centisome position: 63.68

GC content: 54.64

Gene sequence:

>840_bases
ATGAGCATTCCTGCTGCCCGTCAACGCTTTGCCCTTGAAATCCAATCGGAGCCCATCGATCTGGGTCGGGCGGCCCTCTG
GATTGCCCAAGAAGCCTATCCCGATCTGGAGGTGGAAGAGTATGTGGCCGCTCTGGATGAGATGGCCGCAGAGGTGCAAG
AGCGCCTTCCCCCGGAGCGTTATCCCCTGCGGGTCATCAAGATCTTGAATCACTATCTCTTTGAGGATCTGGGCTTTCGT
GGCAATCGCGAAGATTATTACGACCCACGCAACAGCTTTTTGAACGAAGTGATCGATCGGCGCACCGGGATCCCGATTAC
GCTGTCGCTGATCTATCTAGAGCTGGCGCGGCGGATCGATTTTCCCATGGCAGGAGTGGGCATGCCCGGCCACTTTTTAA
TCCGGCCCCTGTTTGCAGGCGCCGAGATTTTTGTGGATCCCTTTCAGCAGGGGGAGATTTTATTTCCAGAAGATTGTCAA
GAGCTTTTGTCGCAAATCTACGGGCCTGGGATCCCTTTCCAAGAACACCACCTACGCCCCACCCCTCCCCGCCTGATCTT
GGTACGCTTGCTCAACAACCTCAAGCAAATTTATCTGAGCCGCGCCGAACTGGAACCCGCTTTGGCAGCAGCGGAACGGA
TCTTGTTGTTGATCCCTGAATCCTTGCCCCACCTAAGGGATCGCGGGCTGTTGTATTATCAGTTGGGCCGTTGGCAGCAA
GCCTGCCAGGATCTCAAGCGCTACTTAAAACAGGCGCCTTTCCACCCCGAGATCAATCGCTCTGATGAGCATTTAATCCG
GGAAATTGTCGAGAGATTGGAATCTCATCCCGACTCATGA

Upstream 100 bases:

>100_bases
GCTCCTGACGGCGGTGACCTTGCTGTTGACCAGCTTTTGCACGCTGCTGTTCTAACCGAGATCCTTGCAAAGAACCTTAA
TATTTAATATTTAACATTTC

Downstream 100 bases:

>100_bases
TAGGAGCATGCACAATTGCTCTCAGTTGTGCGTTGTGTAAGTGTGTAAGTTTTGAGCAAGATCTGCCGTCGTTTGCAAGC
AAGGCTAGGTTTCTAGCAGG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSIPAARQRFALEIQSEPIDLGRAALWIAQEAYPDLEVEEYVAALDEMAAEVQERLPPERYPLRVIKILNHYLFEDLGFR
GNREDYYDPRNSFLNEVIDRRTGIPITLSLIYLELARRIDFPMAGVGMPGHFLIRPLFAGAEIFVDPFQQGEILFPEDCQ
ELLSQIYGPGIPFQEHHLRPTPPRLILVRLLNNLKQIYLSRAELEPALAAAERILLLIPESLPHLRDRGLLYYQLGRWQQ
ACQDLKRYLKQAPFHPEINRSDEHLIREIVERLESHPDS

Sequences:

>Translated_279_residues
MSIPAARQRFALEIQSEPIDLGRAALWIAQEAYPDLEVEEYVAALDEMAAEVQERLPPERYPLRVIKILNHYLFEDLGFR
GNREDYYDPRNSFLNEVIDRRTGIPITLSLIYLELARRIDFPMAGVGMPGHFLIRPLFAGAEIFVDPFQQGEILFPEDCQ
ELLSQIYGPGIPFQEHHLRPTPPRLILVRLLNNLKQIYLSRAELEPALAAAERILLLIPESLPHLRDRGLLYYQLGRWQQ
ACQDLKRYLKQAPFHPEINRSDEHLIREIVERLESHPDS
>Mature_278_residues
SIPAARQRFALEIQSEPIDLGRAALWIAQEAYPDLEVEEYVAALDEMAAEVQERLPPERYPLRVIKILNHYLFEDLGFRG
NREDYYDPRNSFLNEVIDRRTGIPITLSLIYLELARRIDFPMAGVGMPGHFLIRPLFAGAEIFVDPFQQGEILFPEDCQE
LLSQIYGPGIPFQEHHLRPTPPRLILVRLLNNLKQIYLSRAELEPALAAAERILLLIPESLPHLRDRGLLYYQLGRWQQA
CQDLKRYLKQAPFHPEINRSDEHLIREIVERLESHPDS

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI16306500, Length=224, Percent_Identity=29.4642857142857, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI16306502, Length=188, Percent_Identity=32.4468085106383, Blast_Score=92, Evalue=4e-19,
Organism=Escherichia coli, GI1787465, Length=229, Percent_Identity=27.9475982532751, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32409; Mature: 32278

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPAARQRFALEIQSEPIDLGRAALWIAQEAYPDLEVEEYVAALDEMAAEVQERLPPER
CCCCHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
YPLRVIKILNHYLFEDLGFRGNREDYYDPRNSFLNEVIDRRTGIPITLSLIYLELARRID
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
FPMAGVGMPGHFLIRPLFAGAEIFVDPFQQGEILFPEDCQELLSQIYGPGIPFQEHHLRP
CCCCCCCCCHHHHHHHHHCCCHHEECCCCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCC
TPPRLILVRLLNNLKQIYLSRAELEPALAAAERILLLIPESLPHLRDRGLLYYQLGRWQQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCEEEEHHHHHHH
ACQDLKRYLKQAPFHPEINRSDEHLIREIVERLESHPDS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIPAARQRFALEIQSEPIDLGRAALWIAQEAYPDLEVEEYVAALDEMAAEVQERLPPER
CCCHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
YPLRVIKILNHYLFEDLGFRGNREDYYDPRNSFLNEVIDRRTGIPITLSLIYLELARRID
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
FPMAGVGMPGHFLIRPLFAGAEIFVDPFQQGEILFPEDCQELLSQIYGPGIPFQEHHLRP
CCCCCCCCCHHHHHHHHHCCCHHEECCCCCCCEECHHHHHHHHHHHCCCCCCCCCCCCCC
TPPRLILVRLLNNLKQIYLSRAELEPALAAAERILLLIPESLPHLRDRGLLYYQLGRWQQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCEEEEHHHHHHH
ACQDLKRYLKQAPFHPEINRSDEHLIREIVERLESHPDS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]