| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609313
Identifier: 86609313
GI number: 86609313
Start: 1940030
End: 1940677
Strand: Reverse
Name: 86609313
Synonym: CYB_1857
Alternate gene names: NA
Gene position: 1940677-1940030 (Counterclockwise)
Preceding gene: 86609314
Following gene: 86609312
Centisome position: 63.7
GC content: 57.72
Gene sequence:
>648_bases ATGCTAAGGCAGAAGTACCGCGGGGTGGTCATGGCTTCCAGTTCTCAACCTCGTCCGATCCAACGTTGCCCTTCCTGTGG CAAGCCGATCCCAGCCTACCGGTTCAAGTCTCCCTACTGCGACCACTGCGGTTGGCGGGCGGCCCCGGCAGCGCAAGCCC CTCAAAAAGGCGGATCCCTGGGCCAGAAAATCGCAGCTCAGGTAAACGGGATCGGATCCCAAGGTCAACGCCTCAAGGTG CCCCCTCTGCTACAGCCGCTGCTGAACTTCAACTTTTACCTCTATCTGCTCTGGGGGATCAGCCCTCTGTTTCCGCTGGT GGTGGATCGACCCCTGCTGGCCGAATCCAACTATCTGCTCCTAATCCCGCTTTTGTTGAGCTGGGGGCTGCTTTATTTGG CGGTGCGAGATCTGCCGCTGCCGGACAATTTGCGGCTGCCGCGCCTGTTGTTGGATGTATCGTTCATCCTGCTGCCCTTC TTCCAGAAAATTAATGTGTCCAAAGCCCCCAACCGACCCTATTGGAATGCTCTGCTGATTTGGGTGATCGGGATCCTGCT GCTTGCCGCTTTGCGGCTTTGGAGCTTTAGCCTGCTCCTGACGGCGGTGACCTTGCTGTTGACCAGCTTTTGCACGCTGC TGTTCTAA
Upstream 100 bases:
>100_bases CTGGGGCACACTCCCGTTCAGGTCATGGCCGGCGCGGCTTTGGGGGCAGCCTGTATTACATTGTCGTTTGCCCTGGGAGT AAACTGAGAGCCATTGGGGC
Downstream 100 bases:
>100_bases CCGAGATCCTTGCAAAGAACCTTAATATTTAATATTTAACATTTCATGAGCATTCCTGCTGCCCGTCAACGCTTTGCCCT TGAAATCCAATCGGAGCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 215; Mature: 215
Protein sequence:
>215_residues MLRQKYRGVVMASSSQPRPIQRCPSCGKPIPAYRFKSPYCDHCGWRAAPAAQAPQKGGSLGQKIAAQVNGIGSQGQRLKV PPLLQPLLNFNFYLYLLWGISPLFPLVVDRPLLAESNYLLLIPLLLSWGLLYLAVRDLPLPDNLRLPRLLLDVSFILLPF FQKINVSKAPNRPYWNALLIWVIGILLLAALRLWSFSLLLTAVTLLLTSFCTLLF
Sequences:
>Translated_215_residues MLRQKYRGVVMASSSQPRPIQRCPSCGKPIPAYRFKSPYCDHCGWRAAPAAQAPQKGGSLGQKIAAQVNGIGSQGQRLKV PPLLQPLLNFNFYLYLLWGISPLFPLVVDRPLLAESNYLLLIPLLLSWGLLYLAVRDLPLPDNLRLPRLLLDVSFILLPF FQKINVSKAPNRPYWNALLIWVIGILLLAALRLWSFSLLLTAVTLLLTSFCTLLF >Mature_215_residues MLRQKYRGVVMASSSQPRPIQRCPSCGKPIPAYRFKSPYCDHCGWRAAPAAQAPQKGGSLGQKIAAQVNGIGSQGQRLKV PPLLQPLLNFNFYLYLLWGISPLFPLVVDRPLLAESNYLLLIPLLLSWGLLYLAVRDLPLPDNLRLPRLLLDVSFILLPF FQKINVSKAPNRPYWNALLIWVIGILLLAALRLWSFSLLLTAVTLLLTSFCTLLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24136; Mature: 24136
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRQKYRGVVMASSSQPRPIQRCPSCGKPIPAYRFKSPYCDHCGWRAAPAAQAPQKGGSL CCCCHHCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH GQKIAAQVNGIGSQGQRLKVPPLLQPLLNFNFYLYLLWGISPLFPLVVDRPLLAESNYLL HHHHHHHHHCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCHH LIPLLLSWGLLYLAVRDLPLPDNLRLPRLLLDVSFILLPFFQKINVSKAPNRPYWNALLI HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH WVIGILLLAALRLWSFSLLLTAVTLLLTSFCTLLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MLRQKYRGVVMASSSQPRPIQRCPSCGKPIPAYRFKSPYCDHCGWRAAPAAQAPQKGGSL CCCCHHCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH GQKIAAQVNGIGSQGQRLKVPPLLQPLLNFNFYLYLLWGISPLFPLVVDRPLLAESNYLL HHHHHHHHHCCCCCCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCHH LIPLLLSWGLLYLAVRDLPLPDNLRLPRLLLDVSFILLPFFQKINVSKAPNRPYWNALLI HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH WVIGILLLAALRLWSFSLLLTAVTLLLTSFCTLLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA