| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609304
Identifier: 86609304
GI number: 86609304
Start: 1933938
End: 1935041
Strand: Direct
Name: 86609304
Synonym: CYB_1848
Alternate gene names: NA
Gene position: 1933938-1935041 (Clockwise)
Preceding gene: 86609303
Following gene: 86609307
Centisome position: 63.48
GC content: 59.87
Gene sequence:
>1104_bases TTGCCCAGTGAGCAGTTTGAAAGCTCTCCTGTCCCGTTTTCAGGTGCAAATCCCAGGATAAGGAAGGGCATTGTGTTGAA TCTTTTTGCCGGCCTGCTGTTTGCATCCGCTTTCATCAGCCCCTCGGGAAACGTTGTTATCGAAGGGGATTCGGGGGAAT GGGTTTTCGCCGATCATCAAGTCCTAGAAGGGGTTACTCTAACCCTTCTCACACGGCCCGGAGAGAGCTTGGCCTCTTGG AGAGAAATGCTCTCCGTCATGGACGTTCATGTCCAGGGATCGCCGCGCTTTCTCGCCAACCACATGCGGGACAACATCCT GGCTAGCTGCCCCCAAACGACTTGGGAGTTTCATCGGGAGAGCGAAGAAGATGTGCTCTACGAGTTCCGCAGTGCTGGTT GCCGTGGGACGGTGAGTGGAGTTGAGGAACATGAGATTGGCCGGATCACCCGAGGCCCGCGCGGCAGTGTGCGCATTGCC TACGCCGCCAAGCCCCAGATGATGCCTGAACTGCGCAGCCGCTGGCTGAACTTACTGGGCAGCGAGGTGGGGACAGCTCA GGGTTTTCCCATTCGCAACCTCAGCGGGGCGGCTGCACAGCCTTCTTCCCCGGCTTCAGAAGTCCCAACCTCAGAGCGGC AGATCGCCCAGTGGCTGCAGGAAGCAACCGATGCCCTGAAGCAGCAGGAAGATTTGCTGGCCGAGCTGGATCGCCTAGGT CAGGAAGCGCAGGCGGATGCCCGTGCCTACAGCCAAGGAACCCCCAAAGAGGCGGGGCTAAGGACAATCGGCCTGTACCG AGGTCGGGGGGACGGCAGCCCTGGCGAGGCCACAACCGAGTTCAAGACCACTGACACCTTGATCTGGGCCATCTTGCCGG TGGGCAACCTTCCTGCCAACGCCAAGGTGGAGATACTCTGGTACTACGAGGGCGGAGAAGCCGGGGGCGAGCAACTGATC CGCAGGCTAGATGTTCCCTGGGATCCCTTGGCCGATACCGTGCGAGGCTTTCTGAGCTTCAGCCAACCCTACACCGGCCG CTACCGCGTCGAGATTCATGTCAACGGCGAGAAGGTGGGAGTTGGCCGCTTCACGATCCGGTAG
Upstream 100 bases:
>100_bases CATTTGGGTAAGGTTAGCAAAATCAAGCTATAGGAATCTATCAAGATTCTTCTGAGGTGAGCCTTGTAAACGGCAACGAC CTTGTTCAGCCCTTCTTTGC
Downstream 100 bases:
>100_bases TCTCCTGCAAGAAGTACCCCTCCTACGGGGTTACACAGGCTTGGGGGTGGACAATCTCCATCACCAACTCCGACGGGGTG AAGACCGCTGTGCTGGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MPSEQFESSPVPFSGANPRIRKGIVLNLFAGLLFASAFISPSGNVVIEGDSGEWVFADHQVLEGVTLTLLTRPGESLASW REMLSVMDVHVQGSPRFLANHMRDNILASCPQTTWEFHRESEEDVLYEFRSAGCRGTVSGVEEHEIGRITRGPRGSVRIA YAAKPQMMPELRSRWLNLLGSEVGTAQGFPIRNLSGAAAQPSSPASEVPTSERQIAQWLQEATDALKQQEDLLAELDRLG QEAQADARAYSQGTPKEAGLRTIGLYRGRGDGSPGEATTEFKTTDTLIWAILPVGNLPANAKVEILWYYEGGEAGGEQLI RRLDVPWDPLADTVRGFLSFSQPYTGRYRVEIHVNGEKVGVGRFTIR
Sequences:
>Translated_367_residues MPSEQFESSPVPFSGANPRIRKGIVLNLFAGLLFASAFISPSGNVVIEGDSGEWVFADHQVLEGVTLTLLTRPGESLASW REMLSVMDVHVQGSPRFLANHMRDNILASCPQTTWEFHRESEEDVLYEFRSAGCRGTVSGVEEHEIGRITRGPRGSVRIA YAAKPQMMPELRSRWLNLLGSEVGTAQGFPIRNLSGAAAQPSSPASEVPTSERQIAQWLQEATDALKQQEDLLAELDRLG QEAQADARAYSQGTPKEAGLRTIGLYRGRGDGSPGEATTEFKTTDTLIWAILPVGNLPANAKVEILWYYEGGEAGGEQLI RRLDVPWDPLADTVRGFLSFSQPYTGRYRVEIHVNGEKVGVGRFTIR >Mature_366_residues PSEQFESSPVPFSGANPRIRKGIVLNLFAGLLFASAFISPSGNVVIEGDSGEWVFADHQVLEGVTLTLLTRPGESLASWR EMLSVMDVHVQGSPRFLANHMRDNILASCPQTTWEFHRESEEDVLYEFRSAGCRGTVSGVEEHEIGRITRGPRGSVRIAY AAKPQMMPELRSRWLNLLGSEVGTAQGFPIRNLSGAAAQPSSPASEVPTSERQIAQWLQEATDALKQQEDLLAELDRLGQ EAQADARAYSQGTPKEAGLRTIGLYRGRGDGSPGEATTEFKTTDTLIWAILPVGNLPANAKVEILWYYEGGEAGGEQLIR RLDVPWDPLADTVRGFLSFSQPYTGRYRVEIHVNGEKVGVGRFTIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40312; Mature: 40181
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSEQFESSPVPFSGANPRIRKGIVLNLFAGLLFASAFISPSGNVVIEGDSGEWVFADHQ CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECHH VLEGVTLTLLTRPGESLASWREMLSVMDVHVQGSPRFLANHMRDNILASCPQTTWEFHRE HHCCEEEEEEECCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCC SEEDVLYEFRSAGCRGTVSGVEEHEIGRITRGPRGSVRIAYAAKPQMMPELRSRWLNLLG CHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH SEVGTAQGFPIRNLSGAAAQPSSPASEVPTSERQIAQWLQEATDALKQQEDLLAELDRLG HHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QEAQADARAYSQGTPKEAGLRTIGLYRGRGDGSPGEATTEFKTTDTLIWAILPVGNLPAN HHHHHHHHHHCCCCCHHHCCEEEEEEECCCCCCCCCCCCCCCCHHEEEEEEEECCCCCCC AKVEILWYYEGGEAGGEQLIRRLDVPWDPLADTVRGFLSFSQPYTGRYRVEIHVNGEKVG CEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE VGRFTIR CCEEEEC >Mature Secondary Structure PSEQFESSPVPFSGANPRIRKGIVLNLFAGLLFASAFISPSGNVVIEGDSGEWVFADHQ CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECHH VLEGVTLTLLTRPGESLASWREMLSVMDVHVQGSPRFLANHMRDNILASCPQTTWEFHRE HHCCEEEEEEECCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCC SEEDVLYEFRSAGCRGTVSGVEEHEIGRITRGPRGSVRIAYAAKPQMMPELRSRWLNLLG CHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH SEVGTAQGFPIRNLSGAAAQPSSPASEVPTSERQIAQWLQEATDALKQQEDLLAELDRLG HHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QEAQADARAYSQGTPKEAGLRTIGLYRGRGDGSPGEATTEFKTTDTLIWAILPVGNLPAN HHHHHHHHHHCCCCCHHHCCEEEEEEECCCCCCCCCCCCCCCCHHEEEEEEEECCCCCCC AKVEILWYYEGGEAGGEQLIRRLDVPWDPLADTVRGFLSFSQPYTGRYRVEIHVNGEKVG CEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEE VGRFTIR CCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA