Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609251

Identifier: 86609251

GI number: 86609251

Start: 1881001

End: 1881660

Strand: Reverse

Name: 86609251

Synonym: CYB_1793

Alternate gene names: NA

Gene position: 1881660-1881001 (Counterclockwise)

Preceding gene: 86609252

Following gene: 86609250

Centisome position: 61.76

GC content: 62.12

Gene sequence:

>660_bases
ATGACGCTCCGCGCCTTGCCTGGCCAGAACGACGAAACTCGCTATTTTGTCAGTGGTGAGGTACAGGTGGAAGCCGGGGC
GGGGATTGGGGCAGGGGTGCTGCTGCGGGCCAACCCCGGCTGTCGAATTCACATCGGGCGCGGCGCGTGTATCGGCATGG
GATCCGTTCTGCACGCCTGTGGGGGATCCCTCATCGTGGAGGCGGGAGCAACCTTGGGAATGGGGGTGCTGGTGATCGGG
CAGGGCACCATCGGCAAAAACGCCTGCATCGGCTCAGAAACCACAGTGCTGAATTGTTCGGTGCTCAGCCAAGCAGTCAT
TCCCCCCGGCTCGCTGATCGGGGATCCCACCTATGGTTTCGATCTCCAGGAGGCGGGCGGCAGCAAGCCCATCCCGGCAG
AGCCCTCGCCGGCGGCAGTGGAAATGGCTCCAGAGATGTCGCCTGAGCCGTCTCCCCCACCCAGTTCTCCGGTGGCCAAT
GTTGAAAAGCAAACCCGCCGCTGGCAGGAAGCTGCCGAGCAAACCCAAGAAAAGTCCGGTTCCCCAAGGACCAAAACGCG
CAACCTCAACGGGATCCCTGGCCATTGGGAATTGGATCGCCTCTTGAGCAAGATTTATCCCCATCGACAGGTGCTCTCCT
CTGGGGATAGCCGGCTCTGA

Upstream 100 bases:

>100_bases
AACCCCTTGAGGGATCCCAGCTTTTTTTGACCTCTGTTGGTTCAAGCCCAACCCCCCAGCGATGAGGAGCACTTTGTTGG
CCTCTACTTTGCCCAACTCC

Downstream 100 bases:

>100_bases
TGGCTAAACTGGCGTGAGTAGTTAGGATGCCGATGTCAACCTCCCTGGGCCTGATTCAGACGCGCAGCTTTCCGGTCATC
GTGCGCATTGCTGACGCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF I [H]

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTLRALPGQNDETRYFVSGEVQVEAGAGIGAGVLLRANPGCRIHIGRGACIGMGSVLHACGGSLIVEAGATLGMGVLVIG
QGTIGKNACIGSETTVLNCSVLSQAVIPPGSLIGDPTYGFDLQEAGGSKPIPAEPSPAAVEMAPEMSPEPSPPPSSPVAN
VEKQTRRWQEAAEQTQEKSGSPRTKTRNLNGIPGHWELDRLLSKIYPHRQVLSSGDSRL

Sequences:

>Translated_219_residues
MTLRALPGQNDETRYFVSGEVQVEAGAGIGAGVLLRANPGCRIHIGRGACIGMGSVLHACGGSLIVEAGATLGMGVLVIG
QGTIGKNACIGSETTVLNCSVLSQAVIPPGSLIGDPTYGFDLQEAGGSKPIPAEPSPAAVEMAPEMSPEPSPPPSSPVAN
VEKQTRRWQEAAEQTQEKSGSPRTKTRNLNGIPGHWELDRLLSKIYPHRQVLSSGDSRL
>Mature_218_residues
TLRALPGQNDETRYFVSGEVQVEAGAGIGAGVLLRANPGCRIHIGRGACIGMGSVLHACGGSLIVEAGATLGMGVLVIGQ
GTIGKNACIGSETTVLNCSVLSQAVIPPGSLIGDPTYGFDLQEAGGSKPIPAEPSPAAVEMAPEMSPEPSPPPSSPVANV
EKQTRRWQEAAEQTQEKSGSPRTKTRNLNGIPGHWELDRLLSKIYPHRQVLSSGDSRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22742; Mature: 22611

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRALPGQNDETRYFVSGEVQVEAGAGIGAGVLLRANPGCRIHIGRGACIGMGSVLHAC
CCCCCCCCCCCCEEEEEECEEEEECCCCCCCEEEEECCCCCEEEECCCCEECHHHHHHHC
GGSLIVEAGATLGMGVLVIGQGTIGKNACIGSETTVLNCSVLSQAVIPPGSLIGDPTYGF
CCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCC
DLQEAGGSKPIPAEPSPAAVEMAPEMSPEPSPPPSSPVANVEKQTRRWQEAAEQTQEKSG
CHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SPRTKTRNLNGIPGHWELDRLLSKIYPHRQVLSSGDSRL
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCC
>Mature Secondary Structure 
TLRALPGQNDETRYFVSGEVQVEAGAGIGAGVLLRANPGCRIHIGRGACIGMGSVLHAC
CCCCCCCCCCCEEEEEECEEEEECCCCCCCEEEEECCCCCEEEECCCCEECHHHHHHHC
GGSLIVEAGATLGMGVLVIGQGTIGKNACIGSETTVLNCSVLSQAVIPPGSLIGDPTYGF
CCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCC
DLQEAGGSKPIPAEPSPAAVEMAPEMSPEPSPPPSSPVANVEKQTRRWQEAAEQTQEKSG
CHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
SPRTKTRNLNGIPGHWELDRLLSKIYPHRQVLSSGDSRL
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2509426 [H]