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The map label for this gene is yqgF [C]

Identifier: 86609208

GI number: 86609208

Start: 1833258

End: 1833770

Strand: Reverse

Name: yqgF [C]

Synonym: CYB_1750

Alternate gene names: 86609208

Gene position: 1833770-1833258 (Counterclockwise)

Preceding gene: 86609210

Following gene: 86609207

Centisome position: 60.19

GC content: 62.77

Gene sequence:

>513_bases
ATGTCGATAAGCCTGAACTATTCTGCCACAAGGGATCCCCTTTCAGCGCTGGGGCTGGATGTAGGCAACCGCCGCATTGG
CGTGGCCGGCTCCGACCGGCTGGGGCTGCTGGCTACTGGCCTGGGGGTGATCCAGCGCCGTTCCCTCTCAGAGGATATTG
CCCAAGTGCAGGAGTGGATCCGCCGCCGCCAGGCCACCGTGGTGGTGGTGGGGATCCCCCTTCTGGCGGATGGGTCGGTG
GGATCCCAGGCCCGCAAAGTCCAGCGGTTCGTGCGCGCTTTGCAGGTGGCCGTGGATCTTCCCATTGTTACCGTCAATGA
ATACCTGAGCACCGCGCAGGCGGAGTGGGATCTGCGCGAGGCAGGGATCCCGGCCAAAGCCCAGAAGGGCTTAATCGATC
AGCAGTCGGCGGCGGTAATTCTCCAAACTTGGCTGGACGAGCGACGGGCTTCCCTGTCAGAAGTGCCGGCTTGGCAAAGC
TGGGGCAACAAAGACTACGCTGGAGAAGTCTAG

Upstream 100 bases:

>100_bases
GGTCATCGAGTGTTGCTCCAAACAGGGTCATCGAGAGAGGATAGGGGAACGGAAACTGCAAGCCCCAAAGGGGGCCAGGC
AGCCATAAAGATCAGCAAGG

Downstream 100 bases:

>100_bases
CCGGGAAAGTTTAAATCAATTCAAGCCCAAGGTGGGCCATCCCTCGTTGCCCCTTCTGCATCAGCAGGGTGTGATTGTTA
AGTCGGGGCCTTTCGCGCAA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSISLNYSATRDPLSALGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLADGSV
GSQARKVQRFVRALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQSAAVILQTWLDERRASLSEVPAWQS
WGNKDYAGEV

Sequences:

>Translated_170_residues
MSISLNYSATRDPLSALGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLADGSV
GSQARKVQRFVRALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQSAAVILQTWLDERRASLSEVPAWQS
WGNKDYAGEV
>Mature_169_residues
SISLNYSATRDPLSALGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWIRRRQATVVVVGIPLLADGSVG
SQARKVQRFVRALQVAVDLPIVTVNEYLSTAQAEWDLREAGIPAKAQKGLIDQQSAAVILQTWLDERRASLSEVPAWQSW
GNKDYAGEV

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_SYNJB (Q2JKS4)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_477970.1
- ProteinModelPortal:   Q2JKS4
- SMR:   Q2JKS4
- STRING:   Q2JKS4
- GeneID:   3901581
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_1750
- TIGR:   CYB_1750
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q2JKS4
- ProtClustDB:   PRK00109
- BioCyc:   SSP321332:CYB_1750-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 18476; Mature: 18345

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISLNYSATRDPLSALGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWI
CEEECCCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRQATVVVVGIPLLADGSVGSQARKVQRFVRALQVAVDLPIVTVNEYLSTAQAEWDLRE
HHHCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHH
AGIPAKAQKGLIDQQSAAVILQTWLDERRASLSEVPAWQSWGNKDYAGEV
CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCC
>Mature Secondary Structure 
SISLNYSATRDPLSALGLDVGNRRIGVAGSDRLGLLATGLGVIQRRSLSEDIAQVQEWI
EEECCCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRRQATVVVVGIPLLADGSVGSQARKVQRFVRALQVAVDLPIVTVNEYLSTAQAEWDLRE
HHHCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHH
AGIPAKAQKGLIDQQSAAVILQTWLDERRASLSEVPAWQSWGNKDYAGEV
CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA