| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609145
Identifier: 86609145
GI number: 86609145
Start: 1760503
End: 1761384
Strand: Direct
Name: 86609145
Synonym: CYB_1685
Alternate gene names: NA
Gene position: 1760503-1761384 (Clockwise)
Preceding gene: 86609144
Following gene: 86609146
Centisome position: 57.78
GC content: 63.83
Gene sequence:
>882_bases ATGAGCCACTTGGGCATGTTATTGCTGGGCTTGGGCCTCAGTTGGCTGTGGCGAGCCCAGGTGCGCCTGGACAGGAGTGG GGGATGGGGCCGACGTTGGCAGCGGGCTTGGATCCACTTCTTGCTGCCCCCGCTGCTGTTGCTGACCACTGCTTTGGCCT TGGCCTGGATGGGGCCGTGGGGACAAATGGCCGGGGTGGGGGGCTGGTTCTGCTACGGCTGTGCCCTGCTGTTGCTGGCC GTGGCCGGCGGCGTGGCCTTGCACTGGATTTGGGAATACTGGCGCTCCTATCGACGTGCCCATCTGCAAGCTCTGGCCCA GGTGGATTTGCATGGCTCTCCGGCCTACGTGCTGGATTTGGAGATCCCTTTTGCTGCCCAAGTGGGGGTGTGGAATGCCC AGTTGGTGGTCAGCCGCGGCCTGCTGGAGCAGTTGGATGATGAGCACTTGCGGGCCGTAATCGCCCACGAAGAGGCCCAT CGCCACTACCGCGATACCCTCTGGATGTTTGGAGTGGGCTGGCTGCGACGCCTCACCGGCTGGCTGCCCAACACCGAGGC CCTGTGGGAGGAATTGCTCACCCTACGGGAGCTGCGGGCGGATCGCTGGGCGGCCCAACGGGTGGATCCCTTGTTGTTGG GAGAGGCCCTGCTGCAGGTGGTGGGCTATGGCGTGGTGGAGCAACCGGCGGCAGCTTGGGTTGGCTTTGCAATGGCCGTG AGTTCAGACCCAAGGCAGCGGCTGCAAGAGCGTATCGATGCCCTGCTGCAGCAGGCAGAGTCAGGGCCCGTCGATCCCCT ACCCCATTCTTCTTCCATTCGGGGTTGGGCCTGGTTGGGGTTGTCCCTATTGCCTTTGCTGGCGATCCCGTTCCATACCT GA
Upstream 100 bases:
>100_bases TGGCAGCCTTTGCCGATAGCCTGGATCAGGCCAGTGTGTCCCAGTTGCAGGCGATTGCCGAACGGCTGCGGGCAGCCCGT CAAGCCAGGAGGGATCCGCG
Downstream 100 bases:
>100_bases GGATCTGCAGGATGCGATACTCTGGGTCAGGTTTTCTGGACTTCTAGGGACTTACAGCAGTGCAAACCAACTCTTCCCTT TCTGAGGCGACCGGGTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLA VAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAH RHYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT
Sequences:
>Translated_293_residues MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLA VAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAH RHYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT >Mature_292_residues SHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLAV AGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHR HYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAVS SDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT
Specific function: Unknown
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33078; Mature: 32947
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPW CCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GQMAGVGGWFCYGCALLLLAVAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE EIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHRHYRDTLWMFGVGWLRRLTG CCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC WLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPW CHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GQMAGVGGWFCYGCALLLLAVAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE EIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHRHYRDTLWMFGVGWLRRLTG CCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC WLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA