Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609145

Identifier: 86609145

GI number: 86609145

Start: 1760503

End: 1761384

Strand: Direct

Name: 86609145

Synonym: CYB_1685

Alternate gene names: NA

Gene position: 1760503-1761384 (Clockwise)

Preceding gene: 86609144

Following gene: 86609146

Centisome position: 57.78

GC content: 63.83

Gene sequence:

>882_bases
ATGAGCCACTTGGGCATGTTATTGCTGGGCTTGGGCCTCAGTTGGCTGTGGCGAGCCCAGGTGCGCCTGGACAGGAGTGG
GGGATGGGGCCGACGTTGGCAGCGGGCTTGGATCCACTTCTTGCTGCCCCCGCTGCTGTTGCTGACCACTGCTTTGGCCT
TGGCCTGGATGGGGCCGTGGGGACAAATGGCCGGGGTGGGGGGCTGGTTCTGCTACGGCTGTGCCCTGCTGTTGCTGGCC
GTGGCCGGCGGCGTGGCCTTGCACTGGATTTGGGAATACTGGCGCTCCTATCGACGTGCCCATCTGCAAGCTCTGGCCCA
GGTGGATTTGCATGGCTCTCCGGCCTACGTGCTGGATTTGGAGATCCCTTTTGCTGCCCAAGTGGGGGTGTGGAATGCCC
AGTTGGTGGTCAGCCGCGGCCTGCTGGAGCAGTTGGATGATGAGCACTTGCGGGCCGTAATCGCCCACGAAGAGGCCCAT
CGCCACTACCGCGATACCCTCTGGATGTTTGGAGTGGGCTGGCTGCGACGCCTCACCGGCTGGCTGCCCAACACCGAGGC
CCTGTGGGAGGAATTGCTCACCCTACGGGAGCTGCGGGCGGATCGCTGGGCGGCCCAACGGGTGGATCCCTTGTTGTTGG
GAGAGGCCCTGCTGCAGGTGGTGGGCTATGGCGTGGTGGAGCAACCGGCGGCAGCTTGGGTTGGCTTTGCAATGGCCGTG
AGTTCAGACCCAAGGCAGCGGCTGCAAGAGCGTATCGATGCCCTGCTGCAGCAGGCAGAGTCAGGGCCCGTCGATCCCCT
ACCCCATTCTTCTTCCATTCGGGGTTGGGCCTGGTTGGGGTTGTCCCTATTGCCTTTGCTGGCGATCCCGTTCCATACCT
GA

Upstream 100 bases:

>100_bases
TGGCAGCCTTTGCCGATAGCCTGGATCAGGCCAGTGTGTCCCAGTTGCAGGCGATTGCCGAACGGCTGCGGGCAGCCCGT
CAAGCCAGGAGGGATCCGCG

Downstream 100 bases:

>100_bases
GGATCTGCAGGATGCGATACTCTGGGTCAGGTTTTCTGGACTTCTAGGGACTTACAGCAGTGCAAACCAACTCTTCCCTT
TCTGAGGCGACCGGGTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLA
VAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAH
RHYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV
SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT

Sequences:

>Translated_293_residues
MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLA
VAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAH
RHYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV
SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT
>Mature_292_residues
SHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPWGQMAGVGGWFCYGCALLLLAV
AGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDLEIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHR
HYRDTLWMFGVGWLRRLTGWLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAVS
SDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33078; Mature: 32947

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPW
CCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GQMAGVGGWFCYGCALLLLAVAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHRHYRDTLWMFGVGWLRRLTG
CCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SHLGMLLLGLGLSWLWRAQVRLDRSGGWGRRWQRAWIHFLLPPLLLLTTALALAWMGPW
CHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GQMAGVGGWFCYGCALLLLAVAGGVALHWIWEYWRSYRRAHLQALAQVDLHGSPAYVLDL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
EIPFAAQVGVWNAQLVVSRGLLEQLDDEHLRAVIAHEEAHRHYRDTLWMFGVGWLRRLTG
CCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WLPNTEALWEELLTLRELRADRWAAQRVDPLLLGEALLQVVGYGVVEQPAAAWVGFAMAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
SSDPRQRLQERIDALLQQAESGPVDPLPHSSSIRGWAWLGLSLLPLLAIPFHT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA