| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609119
Identifier: 86609119
GI number: 86609119
Start: 1738816
End: 1740378
Strand: Direct
Name: 86609119
Synonym: CYB_1659
Alternate gene names: NA
Gene position: 1738816-1740378 (Clockwise)
Preceding gene: 86609118
Following gene: 86609120
Centisome position: 57.07
GC content: 63.28
Gene sequence:
>1563_bases ATGAAGGACTGGCGCGCGTTAAAGGACTGGACAGGGATCCTGGGCATTGGCGTCATCGCCATCGGCCTGGTGGTGGGATC CGCCTTTACCGGTTGGACGGCTGTGCCCCTGAGCATGCTGGCAACAGGTTTGGCCCTGCTGGTGGTTTGGGGCATCACCC ACCGGCAGGAGGTGGGGGTCTTCCTCGGTCTGCGTTCCACCCAGACCAACGCCAACATCCTGGTGGCGGTGGCGGCGATG GCCGTCATTCTAGTGCTGGTGAATGTGGTGGCGGTGCGCTACGACCTGCGGCTGGATCTCACCGAGGAGGGCCTGTTTAC CCTGTCGCCCCAAACCCGGCAATTGGTGCAGGGATTGGTGCAGCCGGTCAAAGTTTGGGTGGTCACCACTGCGCCGGATC CCAACTTGCGGGAACAACTGGAGCGCTATCGCCGCCTCAACCCCAACCGCTTCCAGTTTGAGTTTGTGGATCCCAACCGG GATCCCTTGACCATTCAGCGGCTGCAGGTGACCCAGAACAACACCCTGGTGGTGGAGGCCGGAGAAAGCCGGCAACAACT GCCTCAGCCCCCTGCCCCTGATCTGGAGAGCAAACTGACCCCCGTCCTGTCCAAAGTGGTCAACCGAGGGGAGTTGCTGG CCTATTTCGTGCAAGGGCATGGGGAAGTGGGGCTGGAAGCGAGGGAAGGCGCCCCAACTCTGGCTCAGGCGGCGGCAGCC CTGGGCCAGGAAGGCTATCGGGTAGAGCCCCTCAACTTGGTGCAAGCGGAGATCCCAGAGGATGCGAATGTCCTGGTGCT GGCGGGGCCACAGCGGGCTTTGTTCCCCGGCGAGGTGGAGAAACTGCAGGATTATCTGGCGAAAGGCGGACGGCTGCTGT TGTTGATTGGGCCACGGGTGGATGCCGGCCTGGATCCCTTGCTGGAAGAGTGGGGCGTGGTCTTGGGGGATGACATCCTC ATTGAGGTGAGCAGCGTCAGCCAACTGTTGGGGACAGGGCCGGCGGTTGCCCTGGTTACTACCTACGGGGATCACCCCAT CACCGCCCCCTTGGCGGCCCAGCGGCTAATGACCCTGTTCCCCCTGGCCCGCTCTGTGGAAACCGAAGCCCGCGAAGGGA TCCAAGCCACGCCCTTGCTGCGCACCGGCCCGCAAAGCTGGGGGGAGACCAGTCCTGAGCTGGAACGTGGCCCCTTGCAA TTCGATCCGGATCAGGACAAGCCCGGCCCCCTTACCCTGGGCGTTGCTTTAACCCGCCGTCTGGACACCGACCCAGAACA GGGCTCGGGATCCCGGCAGGAGGCCCGCCTGGTGGTGATCGGCAATGTCAACTTTGCCCTCAACGGCAACTTGCGGCAGC AGGGCAACCGGGATCTCTTCTTGAACACCCTCAACTGGCTGACTGAGCAAACGGAGCAGATCTCCATCCGCCCCAAATCC CTCACGGATCGCCGTCTCACCCTGACCGGTCAAAACTTCCGCTGGCTGGTGCTGGGATCGACGGTCCTTTTGCCCTTGGC GGCCCTGGGTTCCGGAGCTGCCCTGTGGTGGCAAAGACGGTAG
Upstream 100 bases:
>100_bases GGCTGTTTGCCACGGTGCAATCGGTGGAAAGCCTGCGCTGGCAACAGAGCTGAGGTCAGATGGGAGGAGTGCGGTGTTCG CGGCAGCGGTGCGGAGCATT
Downstream 100 bases:
>100_bases AGCTGGAGGAAAGCAGGCATGTTCAAGCGAACCACCTGGATTCTCCTGGGTTTGGCGGTGGCCTGTTTGCTGGGCTACTT CCTCTTGGACAACATCCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 520; Mature: 520
Protein sequence:
>520_residues MKDWRALKDWTGILGIGVIAIGLVVGSAFTGWTAVPLSMLATGLALLVVWGITHRQEVGVFLGLRSTQTNANILVAVAAM AVILVLVNVVAVRYDLRLDLTEEGLFTLSPQTRQLVQGLVQPVKVWVVTTAPDPNLREQLERYRRLNPNRFQFEFVDPNR DPLTIQRLQVTQNNTLVVEAGESRQQLPQPPAPDLESKLTPVLSKVVNRGELLAYFVQGHGEVGLEAREGAPTLAQAAAA LGQEGYRVEPLNLVQAEIPEDANVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRVDAGLDPLLEEWGVVLGDDIL IEVSSVSQLLGTGPAVALVTTYGDHPITAPLAAQRLMTLFPLARSVETEAREGIQATPLLRTGPQSWGETSPELERGPLQ FDPDQDKPGPLTLGVALTRRLDTDPEQGSGSRQEARLVVIGNVNFALNGNLRQQGNRDLFLNTLNWLTEQTEQISIRPKS LTDRRLTLTGQNFRWLVLGSTVLLPLAALGSGAALWWQRR
Sequences:
>Translated_520_residues MKDWRALKDWTGILGIGVIAIGLVVGSAFTGWTAVPLSMLATGLALLVVWGITHRQEVGVFLGLRSTQTNANILVAVAAM AVILVLVNVVAVRYDLRLDLTEEGLFTLSPQTRQLVQGLVQPVKVWVVTTAPDPNLREQLERYRRLNPNRFQFEFVDPNR DPLTIQRLQVTQNNTLVVEAGESRQQLPQPPAPDLESKLTPVLSKVVNRGELLAYFVQGHGEVGLEAREGAPTLAQAAAA LGQEGYRVEPLNLVQAEIPEDANVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRVDAGLDPLLEEWGVVLGDDIL IEVSSVSQLLGTGPAVALVTTYGDHPITAPLAAQRLMTLFPLARSVETEAREGIQATPLLRTGPQSWGETSPELERGPLQ FDPDQDKPGPLTLGVALTRRLDTDPEQGSGSRQEARLVVIGNVNFALNGNLRQQGNRDLFLNTLNWLTEQTEQISIRPKS LTDRRLTLTGQNFRWLVLGSTVLLPLAALGSGAALWWQRR >Mature_520_residues MKDWRALKDWTGILGIGVIAIGLVVGSAFTGWTAVPLSMLATGLALLVVWGITHRQEVGVFLGLRSTQTNANILVAVAAM AVILVLVNVVAVRYDLRLDLTEEGLFTLSPQTRQLVQGLVQPVKVWVVTTAPDPNLREQLERYRRLNPNRFQFEFVDPNR DPLTIQRLQVTQNNTLVVEAGESRQQLPQPPAPDLESKLTPVLSKVVNRGELLAYFVQGHGEVGLEAREGAPTLAQAAAA LGQEGYRVEPLNLVQAEIPEDANVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRVDAGLDPLLEEWGVVLGDDIL IEVSSVSQLLGTGPAVALVTTYGDHPITAPLAAQRLMTLFPLARSVETEAREGIQATPLLRTGPQSWGETSPELERGPLQ FDPDQDKPGPLTLGVALTRRLDTDPEQGSGSRQEARLVVIGNVNFALNGNLRQQGNRDLFLNTLNWLTEQTEQISIRPKS LTDRRLTLTGQNFRWLVLGSTVLLPLAALGSGAALWWQRR
Specific function: Unknown
COG id: COG3225
COG function: function code N; ABC-type uncharacterized transport system involved in gliding motility, auxiliary component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56751; Mature: 56751
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDWRALKDWTGILGIGVIAIGLVVGSAFTGWTAVPLSMLATGLALLVVWGITHRQEVGV CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FLGLRSTQTNANILVAVAAMAVILVLVNVVAVRYDLRLDLTEEGLFTLSPQTRQLVQGLV EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEECCHHHHHHHHHH QPVKVWVVTTAPDPNLREQLERYRRLNPNRFQFEFVDPNRDPLTIQRLQVTQNNTLVVEA CEEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCEEEEEC GESRQQLPQPPAPDLESKLTPVLSKVVNRGELLAYFVQGHGEVGLEAREGAPTLAQAAAA CCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH LGQEGYRVEPLNLVQAEIPEDANVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRV HCCCCCEECCHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC DAGLDPLLEEWGVVLGDDILIEVSSVSQLLGTGPAVALVTTYGDHPITAPLAAQRLMTLF CCCCCHHHHHCCCEECCCEEEEHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHH PLARSVETEAREGIQATPLLRTGPQSWGETSPELERGPLQFDPDQDKPGPLTLGVALTRR HHHHHHHHHHHCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHH LDTDPEQGSGSRQEARLVVIGNVNFALNGNLRQQGNRDLFLNTLNWLTEQTEQISIRPKS CCCCCCCCCCCCCCEEEEEEECCEEEECCCHHHCCCCEEEHHHHHHHHCCCCEEEECCCC LTDRRLTLTGQNFRWLVLGSTVLLPLAALGSGAALWWQRR CCCCEEEEECCCEEEEEECCHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure MKDWRALKDWTGILGIGVIAIGLVVGSAFTGWTAVPLSMLATGLALLVVWGITHRQEVGV CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FLGLRSTQTNANILVAVAAMAVILVLVNVVAVRYDLRLDLTEEGLFTLSPQTRQLVQGLV EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEECCHHHHHHHHHH QPVKVWVVTTAPDPNLREQLERYRRLNPNRFQFEFVDPNRDPLTIQRLQVTQNNTLVVEA CEEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCEEEEEC GESRQQLPQPPAPDLESKLTPVLSKVVNRGELLAYFVQGHGEVGLEAREGAPTLAQAAAA CCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH LGQEGYRVEPLNLVQAEIPEDANVLVLAGPQRALFPGEVEKLQDYLAKGGRLLLLIGPRV HCCCCCEECCHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC DAGLDPLLEEWGVVLGDDILIEVSSVSQLLGTGPAVALVTTYGDHPITAPLAAQRLMTLF CCCCCHHHHHCCCEECCCEEEEHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHH PLARSVETEAREGIQATPLLRTGPQSWGETSPELERGPLQFDPDQDKPGPLTLGVALTRR HHHHHHHHHHHCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHH LDTDPEQGSGSRQEARLVVIGNVNFALNGNLRQQGNRDLFLNTLNWLTEQTEQISIRPKS CCCCCCCCCCCCCCEEEEEEECCEEEECCCHHHCCCCEEEHHHHHHHHCCCCEEEECCCC LTDRRLTLTGQNFRWLVLGSTVLLPLAALGSGAALWWQRR CCCCEEEEECCCEEEEEECCHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA