| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609120
Identifier: 86609120
GI number: 86609120
Start: 1740397
End: 1741881
Strand: Direct
Name: 86609120
Synonym: CYB_1660
Alternate gene names: NA
Gene position: 1740397-1741881 (Clockwise)
Preceding gene: 86609119
Following gene: 86609125
Centisome position: 57.12
GC content: 61.08
Gene sequence:
>1485_bases ATGTTCAAGCGAACCACCTGGATTCTCCTGGGTTTGGCGGTGGCCTGTTTGCTGGGCTACTTCCTCTTGGACAACATCCA GCAACTGCGTCAGGAGCAACAGGCGGAGCGAGCGCGGCTGTTCCATTTTGCCACCGATACCATTGCCCGCATTGAAATCC GCCAACAGAAAGAGGGGGAACCCGTTCGCGGCAGCGGTGCGGAGCACTTGGAAATCCTTTTGGAGCGCAATCCAGAAGAA GAGGGATCCCGCTGGCGGATTGTCAGTCCCATTCAGTCAGCGGCGCTGGACTTCCCCATTGAGCAGTTGCTCAACACCTT CTCCCGCCTCACTCCCCAAATCACCCTAGAGGGGGCCACCGACCTAGCCGCTTTTGGCCTGGATCAGCCGCGACACCAAA TTGCCCTTTTCCCCAAAGAAGGGGATCCCTACCGCCTAGCCATCGGCAACGACAACTTCGACGGCTCTGGCTTCTACGCC CAGCCCGAAGGGGGACAGGTGGTGCTTCTAAGCAGTGCCCAGAAGGGATCCCTGTTGCCCTCTCTCTTGGCTTTGCGGGA CAAGACTTTGCTTCAGTTTGATACAGCCGAGGTGAAAGCCCTGCAAGTGCAGTTGGCAGAGGCGGAGCCGGAAGTTGTTC GCCTGCAGCGGCAAGACGTTCGCGCCAGCGGTGCGGAGCACTTTACTTGGCAGATTGTCCAGCCCCGCGAGCTGCCTGCC GATGAGATCAACGTCAACCGCTTGCTCAATACTCTGGCCCGCCTGCAGGCCGTGGAGTTCCCCGCCGAGACCCAGACGGA TCTAGCCCCCTATGGCTTGGAGCAGCCTTCCGCCCGGCTGACGGTAGAGCTGGAGGGCGGCAAAACCCTGAAGGTCGCTT TGGGATCGGAGAAAGATGGCCAGGTGTACGTCATCACCTCTGAGCACCCGGCAGTGGCCACCCTGCTCACCAGCACCGCC GATATTCTCCGCTCCGACTTGGAAGAGCTGCGGGATCACCGCATTGCCCGCCTCAACGCCAACCAAGTGGGCCAAGTCAC CTTAGAATCCCAAGGGGAAAAGGTCACCCTCACCCCTCGGCCTTCAGAGAAGGGATCCTTGGAGCTGCGCTGGGAAAACC CGGAGCGACCGGGCCAGCCTGTGGATCTCGGCTCTCTGTTCTCCAGCCTAAATGCTGCCCGCGCCAAGGAGTTTGTGGAA CAGGCCGACGCGGAAGCCCAAAGGGTGTTGTCTGAGCCCGACCTACGGCTGACCTTTGAGCCCAAACCCGACGCCGAGCA GGATCCCTTGGCCCTGAGCTTGGCCGCCTCTGGCTTGCGGGCCTATGTGCAAAGCAGCCGCCAGCCGGACATTGCCGTGA TCGAGCTGAGCACCTTCAACAGCCTGGAAACCGAAGTGAATCGCCTCTTGGAAGGCCAGCCGGAGAGCAAGGACTCCGCC CCACTCACGCAACCGCCTTCCACCCCCTCGCCCCCGAGTTCCTAG
Upstream 100 bases:
>100_bases CTGGCTGGTGCTGGGATCGACGGTCCTTTTGCCCTTGGCGGCCCTGGGTTCCGGAGCTGCCCTGTGGTGGCAAAGACGGT AGAGCTGGAGGAAAGCAGGC
Downstream 100 bases:
>100_bases AGCCTTAGCCAGCAGAGGTAGCTGTCTTCTCCTCCGCAGTTTGGGCTTCTTTTTTCAGGGCTTCCCCTTGTATCGTCAAC ACCGAGCAGGGGGCGCGGTG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MFKRTTWILLGLAVACLLGYFLLDNIQQLRQEQQAERARLFHFATDTIARIEIRQQKEGEPVRGSGAEHLEILLERNPEE EGSRWRIVSPIQSAALDFPIEQLLNTFSRLTPQITLEGATDLAAFGLDQPRHQIALFPKEGDPYRLAIGNDNFDGSGFYA QPEGGQVVLLSSAQKGSLLPSLLALRDKTLLQFDTAEVKALQVQLAEAEPEVVRLQRQDVRASGAEHFTWQIVQPRELPA DEINVNRLLNTLARLQAVEFPAETQTDLAPYGLEQPSARLTVELEGGKTLKVALGSEKDGQVYVITSEHPAVATLLTSTA DILRSDLEELRDHRIARLNANQVGQVTLESQGEKVTLTPRPSEKGSLELRWENPERPGQPVDLGSLFSSLNAARAKEFVE QADAEAQRVLSEPDLRLTFEPKPDAEQDPLALSLAASGLRAYVQSSRQPDIAVIELSTFNSLETEVNRLLEGQPESKDSA PLTQPPSTPSPPSS
Sequences:
>Translated_494_residues MFKRTTWILLGLAVACLLGYFLLDNIQQLRQEQQAERARLFHFATDTIARIEIRQQKEGEPVRGSGAEHLEILLERNPEE EGSRWRIVSPIQSAALDFPIEQLLNTFSRLTPQITLEGATDLAAFGLDQPRHQIALFPKEGDPYRLAIGNDNFDGSGFYA QPEGGQVVLLSSAQKGSLLPSLLALRDKTLLQFDTAEVKALQVQLAEAEPEVVRLQRQDVRASGAEHFTWQIVQPRELPA DEINVNRLLNTLARLQAVEFPAETQTDLAPYGLEQPSARLTVELEGGKTLKVALGSEKDGQVYVITSEHPAVATLLTSTA DILRSDLEELRDHRIARLNANQVGQVTLESQGEKVTLTPRPSEKGSLELRWENPERPGQPVDLGSLFSSLNAARAKEFVE QADAEAQRVLSEPDLRLTFEPKPDAEQDPLALSLAASGLRAYVQSSRQPDIAVIELSTFNSLETEVNRLLEGQPESKDSA PLTQPPSTPSPPSS >Mature_494_residues MFKRTTWILLGLAVACLLGYFLLDNIQQLRQEQQAERARLFHFATDTIARIEIRQQKEGEPVRGSGAEHLEILLERNPEE EGSRWRIVSPIQSAALDFPIEQLLNTFSRLTPQITLEGATDLAAFGLDQPRHQIALFPKEGDPYRLAIGNDNFDGSGFYA QPEGGQVVLLSSAQKGSLLPSLLALRDKTLLQFDTAEVKALQVQLAEAEPEVVRLQRQDVRASGAEHFTWQIVQPRELPA DEINVNRLLNTLARLQAVEFPAETQTDLAPYGLEQPSARLTVELEGGKTLKVALGSEKDGQVYVITSEHPAVATLLTSTA DILRSDLEELRDHRIARLNANQVGQVTLESQGEKVTLTPRPSEKGSLELRWENPERPGQPVDLGSLFSSLNAARAKEFVE QADAEAQRVLSEPDLRLTFEPKPDAEQDPLALSLAASGLRAYVQSSRQPDIAVIELSTFNSLETEVNRLLEGQPESKDSA PLTQPPSTPSPPSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54529; Mature: 54529
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKRTTWILLGLAVACLLGYFLLDNIQQLRQEQQAERARLFHFATDTIARIEIRQQKEGE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHCCCC PVRGSGAEHLEILLERNPEEEGSRWRIVSPIQSAALDFPIEQLLNTFSRLTPQITLEGAT CCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHCCCEEEECCCC DLAAFGLDQPRHQIALFPKEGDPYRLAIGNDNFDGSGFYAQPEGGQVVLLSSAQKGSLLP HHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCCHHH SLLALRDKTLLQFDTAEVKALQVQLAEAEPEVVRLQRQDVRASGAEHFTWQIVQPRELPA HHHHHCCCHHEEECCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC DEINVNRLLNTLARLQAVEFPAETQTDLAPYGLEQPSARLTVELEGGKTLKVALGSEKDG CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC QVYVITSEHPAVATLLTSTADILRSDLEELRDHRIARLNANQVGQVTLESQGEKVTLTPR EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCEEEECCC PSEKGSLELRWENPERPGQPVDLGSLFSSLNAARAKEFVEQADAEAQRVLSEPDLRLTFE CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC PKPDAEQDPLALSLAASGLRAYVQSSRQPDIAVIELSTFNSLETEVNRLLEGQPESKDSA CCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC PLTQPPSTPSPPSS CCCCCCCCCCCCCC >Mature Secondary Structure MFKRTTWILLGLAVACLLGYFLLDNIQQLRQEQQAERARLFHFATDTIARIEIRQQKEGE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHCCCC PVRGSGAEHLEILLERNPEEEGSRWRIVSPIQSAALDFPIEQLLNTFSRLTPQITLEGAT CCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCHHHHHHHHHHCCCEEEECCCC DLAAFGLDQPRHQIALFPKEGDPYRLAIGNDNFDGSGFYAQPEGGQVVLLSSAQKGSLLP HHHHHCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCCHHH SLLALRDKTLLQFDTAEVKALQVQLAEAEPEVVRLQRQDVRASGAEHFTWQIVQPRELPA HHHHHCCCHHEEECCHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC DEINVNRLLNTLARLQAVEFPAETQTDLAPYGLEQPSARLTVELEGGKTLKVALGSEKDG CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC QVYVITSEHPAVATLLTSTADILRSDLEELRDHRIARLNANQVGQVTLESQGEKVTLTPR EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCCCEEEECCC PSEKGSLELRWENPERPGQPVDLGSLFSSLNAARAKEFVEQADAEAQRVLSEPDLRLTFE CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC PKPDAEQDPLALSLAASGLRAYVQSSRQPDIAVIELSTFNSLETEVNRLLEGQPESKDSA CCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCC PLTQPPSTPSPPSS CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA