Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609028

Identifier: 86609028

GI number: 86609028

Start: 1636487

End: 1637269

Strand: Direct

Name: 86609028

Synonym: CYB_1564

Alternate gene names: NA

Gene position: 1636487-1637269 (Clockwise)

Preceding gene: 86609026

Following gene: 86609033

Centisome position: 53.71

GC content: 61.3

Gene sequence:

>783_bases
ATGAAAACCCCGATACAATGCCTAGCCCTACACTTGGGAGAATGGCACGGCCTCTTTTCTGACTATCGACCTACTGCCCA
CGGTGGTTGGGAGCTAGTAGGCCAAAAGCGCAGCCTCATTACCTTTGAGGCTTTGGAGTTGGGCGCGATCCGCCAAACCA
ATGCCTACTACCCCCTGGAGGGATCCCCCACTCCCGAAAGCTCCCAGAGCTGGGTCTACCAGGATTTCTCGCCGGGATTG
CGCTTTTTCCCCGATGGATCTTTTTCCAATGGGCGGCTGCAGCTGGCGCCGTTTAGTGATTTTGCCGTCGAGCAGGGCTT
TCTCTGGGGGGATCGCAAGGCGCGGCTGGTGCAACAGTGGGATGCCCAAGGTCGTCTGGTAGAGGTAACCGCGATCCTGG
AGCGGCGCGGCCAAGCTTTGGATCCCGTTGCAGACTGTGCACCCCTGAGCAGAGAGCAGCTGAGAGCCTGCCTCCAGGGG
AGATGGCGGGGGATCGCCCAGAGCTTTGCGGTTGCCGAGGGCCGGTTTGCCGAAACCGAGGTGGACTCCTCGGGGGCAGA
GTGGTTGAGCAACTGGGATCCCTTGCCGGGAGGGCTGTGGATTGGCGGGCCGGATCCCTTGCCCATCCCCACTGCCCAGC
GGGATCGCAGCTTTTCGGTAAGCCTGAGCTGGTTTCCGCAGCCGGAAGACTGCCACTGTCTCTTGCGTTTGAGCCGAGAC
TACGATGCCCGCGGTGCTTGGCAGCGGGTTACGCTGATCCGGGCGCAGAAGGATCCTGGTTGA

Upstream 100 bases:

>100_bases
CTTTCATCAGAAAGCTGATGTTATCCCCAAAAGGTAAAATACCACCCCGGAGCTTCTTCCCCATCGGCTCTGTCTTCAAC
GTTGCACTTCAGGCTTCTTC

Downstream 100 bases:

>100_bases
GGAAGGCGCAAACCTGGTCAAACACCGTTTCCCGCTCGCAGTCCAAAGTGAGGATGTGGTCGGAGTGCTCCAGCCAAGAC
AAGATCTTCTCCTCGGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKTPIQCLALHLGEWHGLFSDYRPTAHGGWELVGQKRSLITFEALELGAIRQTNAYYPLEGSPTPESSQSWVYQDFSPGL
RFFPDGSFSNGRLQLAPFSDFAVEQGFLWGDRKARLVQQWDAQGRLVEVTAILERRGQALDPVADCAPLSREQLRACLQG
RWRGIAQSFAVAEGRFAETEVDSSGAEWLSNWDPLPGGLWIGGPDPLPIPTAQRDRSFSVSLSWFPQPEDCHCLLRLSRD
YDARGAWQRVTLIRAQKDPG

Sequences:

>Translated_260_residues
MKTPIQCLALHLGEWHGLFSDYRPTAHGGWELVGQKRSLITFEALELGAIRQTNAYYPLEGSPTPESSQSWVYQDFSPGL
RFFPDGSFSNGRLQLAPFSDFAVEQGFLWGDRKARLVQQWDAQGRLVEVTAILERRGQALDPVADCAPLSREQLRACLQG
RWRGIAQSFAVAEGRFAETEVDSSGAEWLSNWDPLPGGLWIGGPDPLPIPTAQRDRSFSVSLSWFPQPEDCHCLLRLSRD
YDARGAWQRVTLIRAQKDPG
>Mature_260_residues
MKTPIQCLALHLGEWHGLFSDYRPTAHGGWELVGQKRSLITFEALELGAIRQTNAYYPLEGSPTPESSQSWVYQDFSPGL
RFFPDGSFSNGRLQLAPFSDFAVEQGFLWGDRKARLVQQWDAQGRLVEVTAILERRGQALDPVADCAPLSREQLRACLQG
RWRGIAQSFAVAEGRFAETEVDSSGAEWLSNWDPLPGGLWIGGPDPLPIPTAQRDRSFSVSLSWFPQPEDCHCLLRLSRD
YDARGAWQRVTLIRAQKDPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29145; Mature: 29145

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPIQCLALHLGEWHGLFSDYRPTAHGGWELVGQKRSLITFEALELGAIRQTNAYYPLE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEHHHCCCEECCCCEECCC
GSPTPESSQSWVYQDFSPGLRFFPDGSFSNGRLQLAPFSDFAVEQGFLWGDRKARLVQQW
CCCCCCCCCCEEEECCCCCCEECCCCCCCCCEEEEECCHHHHHHCCCEECCHHHHHHHHH
DAQGRLVEVTAILERRGQALDPVADCAPLSREQLRACLQGRWRGIAQSFAVAEGRFAETE
CCCCCEEHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VDSSGAEWLSNWDPLPGGLWIGGPDPLPIPTAQRDRSFSVSLSWFPQPEDCHCLLRLSRD
CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCC
YDARGAWQRVTLIRAQKDPG
CCCCCCEEEEEEEEECCCCC
>Mature Secondary Structure
MKTPIQCLALHLGEWHGLFSDYRPTAHGGWELVGQKRSLITFEALELGAIRQTNAYYPLE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEEEHHHCCCEECCCCEECCC
GSPTPESSQSWVYQDFSPGLRFFPDGSFSNGRLQLAPFSDFAVEQGFLWGDRKARLVQQW
CCCCCCCCCCEEEECCCCCCEECCCCCCCCCEEEEECCHHHHHHCCCEECCHHHHHHHHH
DAQGRLVEVTAILERRGQALDPVADCAPLSREQLRACLQGRWRGIAQSFAVAEGRFAETE
CCCCCEEHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VDSSGAEWLSNWDPLPGGLWIGGPDPLPIPTAQRDRSFSVSLSWFPQPEDCHCLLRLSRD
CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCC
YDARGAWQRVTLIRAQKDPG
CCCCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA