| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608951
Identifier: 86608951
GI number: 86608951
Start: 1560912
End: 1561280
Strand: Direct
Name: 86608951
Synonym: CYB_1484
Alternate gene names: NA
Gene position: 1560912-1561280 (Clockwise)
Preceding gene: 86608950
Following gene: 86608952
Centisome position: 51.23
GC content: 52.85
Gene sequence:
>369_bases ATGGCTAATCTGTCCTCTTTGCAGGCGATCCTCCAGAGCTATGTTGCCAACACACCGGAAGTCCAGGGAGCAGCAGTGGT CACCCCCGACGGGCTACCTTTAGCTTCCACACTGCCTGTGGGTATGGATGAAGAGAGAACCTCTGCTATGTCGGCTGCCA TGCTTTCTTTGGGCGAACGGATTGGGAGAGAGCTAGGGCGCGGAGCCATAGAGAGAGTTTTTGTACAGGGGGAAAAAGGA TACGGGGTTTTAACCAGTTGTGGCCCCGATGCCGTCTTGCTGACAATTGCCAGTCATGAAGTCAAGCAGGGCTTGCTTTT TTTGGAAATTAAGCGAGTCGCGGCAAGCATTGCAGAGGCAATGAAGTAA
Upstream 100 bases:
>100_bases AGGGCATGCGCGAAAAATAAAAGCATAGGGATATTTGCAGTCATGTTTTCGGTTTTCGGGTAGAAACATTAGAAATAGTG AATCAGCAGGGAGATGTAGG
Downstream 100 bases:
>100_bases GAAAATCAAATGTGGAGGCTAAGTTTTTGATTCTGTCCTGACGTTGAGGGAAGTATGGCCATTAAACCTTCTGAGCTGCT CCAAGTCCTGATCTCACGCA
Product: roadblock/LC7 domain-contain protein
Products: NA
Alternate protein names: Roadblock/LC7 Domain Superfamily; Roadblock/LC7 Domain-Contain Protein; Carboxy- Peptidase; Roadblock/LC7 Domain Protein; Roadblock/LC7 Domain Family
Number of amino acids: Translated: 122; Mature: 121
Protein sequence:
>122_residues MANLSSLQAILQSYVANTPEVQGAAVVTPDGLPLASTLPVGMDEERTSAMSAAMLSLGERIGRELGRGAIERVFVQGEKG YGVLTSCGPDAVLLTIASHEVKQGLLFLEIKRVAASIAEAMK
Sequences:
>Translated_122_residues MANLSSLQAILQSYVANTPEVQGAAVVTPDGLPLASTLPVGMDEERTSAMSAAMLSLGERIGRELGRGAIERVFVQGEKG YGVLTSCGPDAVLLTIASHEVKQGLLFLEIKRVAASIAEAMK >Mature_121_residues ANLSSLQAILQSYVANTPEVQGAAVVTPDGLPLASTLPVGMDEERTSAMSAAMLSLGERIGRELGRGAIERVFVQGEKGY GVLTSCGPDAVLLTIASHEVKQGLLFLEIKRVAASIAEAMK
Specific function: Unknown
COG id: COG2018
COG function: function code R; Uncharacterized distant relative of homeotic protein bithoraxoid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12742; Mature: 12611
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANLSSLQAILQSYVANTPEVQGAAVVTPDGLPLASTLPVGMDEERTSAMSAAMLSLGER CCCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH IGRELGRGAIERVFVQGEKGYGVLTSCGPDAVLLTIASHEVKQGLLFLEIKRVAASIAEA HHHHHCHHHHHHHHHCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH MK CC >Mature Secondary Structure ANLSSLQAILQSYVANTPEVQGAAVVTPDGLPLASTLPVGMDEERTSAMSAAMLSLGER CCHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH IGRELGRGAIERVFVQGEKGYGVLTSCGPDAVLLTIASHEVKQGLLFLEIKRVAASIAEA HHHHHCHHHHHHHHHCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH MK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA