| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608950
Identifier: 86608950
GI number: 86608950
Start: 1559947
End: 1560831
Strand: Direct
Name: 86608950
Synonym: CYB_1483
Alternate gene names: NA
Gene position: 1559947-1560831 (Clockwise)
Preceding gene: 86608949
Following gene: 86608951
Centisome position: 51.2
GC content: 59.66
Gene sequence:
>885_bases ATGGCCATAGTTGGAGACCTCCAAGAATTTTCCTTGCCTGATTTGTTGCAGCTGATCGAGAGAGGCAGCAAAACAGGACA GCTCTGTATTTGGGCGCCCAGAGGTATCTACAGGATCTGGTTTTACCAAGGTCGGGTCATTGCTGCCCTACCACCTCAGG AAGAACACCGCCTGGAGAGCCTGCTGGCCCACTCTGGCTTGGTGAGCGAGCGGGTAGTCGAGAAGCTGGCTTCCTTTTGC GGCTCGGAAGAGCCTCTGGGGCGTTGCTTGCAGCGGCAAGGGTTGATTACCCCAGCAGCCCTGGCCAAGCTCTTCCGCCA TCAACTGCAAACCGGCCTCTACAGCCTCTTTGCCCTCGAATCCGGCCAGTTCAGCTTCCTGCCCAACGTGCCCATGCCCT ACCGAGAAATGACTGGCCTCAGCAAAAGCGCTACCGCTGCCGTCCTGGAAGCCCTGCAGCAGCTCAAGCTAGAGCAGCAG CCCGAAAAAGACCTGCCAGAGCCCGATAGCTGCTTTTGGCGTACCAGCACCGAACTGCCTCTGTTCAAACTTTCTGCGCT GGAGTGGGGGATCCTGGAGCAGGTGTCGCCTTCTCGCAAGCTGACGGCTTTGGCTCAAGCCCTGGGGGCCGACTTGTTGG AGGTGCGCTATGCCTGCGCCCGTCTGGCCAAGCTGGGGTTGATCAGCCCCTGTGAGGGGCCAACGGTTCTGGCTCGGTCT GGTCACTTGGAGCTGTCCAAGTCGATTGCTGAGGAGGTGAATCCCGAGCCGGTGAGGGAGAGGCTGGGGGCAAGGGTGCC TGGTCTCCAGGATGAGGGCGGCCCCGTCAAGCCTTCTCTGGTCAGTCGATTAGCCACCCTCCTCAAGGGCATGCGCGAAA AATAA
Upstream 100 bases:
>100_bases TTGTCCGAGAGTACATGTACAAGAATAGGGATGTCCAAAAAATCACTGAAGCATTGATTTTTCACCCATTCCATCGAAGC GAGGTTCATAGAGAGTTCTT
Downstream 100 bases:
>100_bases AAGCATAGGGATATTTGCAGTCATGTTTTCGGTTTTCGGGTAGAAACATTAGAAATAGTGAATCAGCAGGGAGATGTAGG ATGGCTAATCTGTCCTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MAIVGDLQEFSLPDLLQLIERGSKTGQLCIWAPRGIYRIWFYQGRVIAALPPQEEHRLESLLAHSGLVSERVVEKLASFC GSEEPLGRCLQRQGLITPAALAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQQ PEKDLPEPDSCFWRTSTELPLFKLSALEWGILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARS GHLELSKSIAEEVNPEPVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK
Sequences:
>Translated_294_residues MAIVGDLQEFSLPDLLQLIERGSKTGQLCIWAPRGIYRIWFYQGRVIAALPPQEEHRLESLLAHSGLVSERVVEKLASFC GSEEPLGRCLQRQGLITPAALAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQQ PEKDLPEPDSCFWRTSTELPLFKLSALEWGILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARS GHLELSKSIAEEVNPEPVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK >Mature_293_residues AIVGDLQEFSLPDLLQLIERGSKTGQLCIWAPRGIYRIWFYQGRVIAALPPQEEHRLESLLAHSGLVSERVVEKLASFCG SEEPLGRCLQRQGLITPAALAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQQP EKDLPEPDSCFWRTSTELPLFKLSALEWGILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSG HLELSKSIAEEVNPEPVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32402; Mature: 32271
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIVGDLQEFSLPDLLQLIERGSKTGQLCIWAPRGIYRIWFYQGRVIAALPPQEEHRLES CCCCCCHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCEEEEECCCCHHHHHHH LLAHSGLVSERVVEKLASFCGSEEPLGRCLQRQGLITPAALAKLFRHQLQTGLYSLFALE HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC SGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQQPEKDLPEPDSCFWRTSTELP CCCEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC LFKLSALEWGILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARS HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC GHLELSKSIAEEVNPEPVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK CCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure AIVGDLQEFSLPDLLQLIERGSKTGQLCIWAPRGIYRIWFYQGRVIAALPPQEEHRLES CCCCCHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCEEEEECCCCHHHHHHH LLAHSGLVSERVVEKLASFCGSEEPLGRCLQRQGLITPAALAKLFRHQLQTGLYSLFALE HHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC SGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQQPEKDLPEPDSCFWRTSTELP CCCEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC LFKLSALEWGILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARS HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC GHLELSKSIAEEVNPEPVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK CCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA