| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608949
Identifier: 86608949
GI number: 86608949
Start: 1558659
End: 1559549
Strand: Direct
Name: 86608949
Synonym: CYB_1482
Alternate gene names: NA
Gene position: 1558659-1559549 (Clockwise)
Preceding gene: 86608948
Following gene: 86608950
Centisome position: 51.16
GC content: 59.26
Gene sequence:
>891_bases ATGGCGATGCTTGGAGATCTTCAGGAATTTTCCTTATGCGACCTGTTGCATTTAATGGAAAAGGGTAAGAAAGCAGGGCA ATTATCCATCTGGGCACCCAATGGCATTCAGCGGATTTGGTTTTACCAAGGTCGGGTGGTCGCCGCCCTCACCCCTGAAG AAAAGCATCGTTTGGAAAGCCTGCTGACGCGCTTTGGCTTGGTGGACGAGCAGGTGGTCAGCCAGTTGGTCGCTAGGGGC TTGGAGGAGCCTCTGGGGCGTTGCCTGCAGCGGCAAGGGTTGATCTCGCCCGTAGATTTGGCCAAGCTCTTTCGCCATCA ACTGCAAACCGGCCTCTACAGCCTCTTCGCCCTCGAATCCGGCCAGTTCAGCTTCCTGCCCAACGTGCCCATGCCCTACC GAGAAATGACTGGCCTCAGCAAAAGCGCCACCGCTGCCGTCCTGGAAGCCCTGCAGCAGCTCAAGCTGGAGCAACGCCCC GAAAAAGACCTGCCCGAACCCGATAGTTGCTTTTGGCGTACCAGCACCGAACTGCCTCTGTTCAAGCTTTCTGCGCTGGA GTGGTCGATCCTGGAGCAGGTGTCGCCTTCTCGCAAGCTGACGGCTTTGGCTCAAGCCCTGGGGGCAGACCTGCTGGAGG TGCGCTATGCCTGCGCCCGTCTGGCGAAGCTGGGGTTGATCAGTCCCTGTGAGGGCCCAACGGTTCTGGCTCGGTCTTCT TCGGCCAGTCGCTTGCAACTGTCCGAGTCGGTGGCTGAGGAAGCAAATCCTGAGCAGGTGAGAGAGAGGCTGGGGGCAAG GGTGCCTGGTCTCCAGGATGAGGGCGGCCCCGTCAAGCCTTCTCTGGTCAGTCGATTGGCCACCCTCCTCAAGGGCATGC GCGAAAAGTGA
Upstream 100 bases:
>100_bases AACCAAGCTGTAAGCGCATCTTCTGGTTTCTTACTTAGCAAAGCAAAAACCGTGAAAATACTGAGAAAGCGCATCTTGCA GCGGTGAAGGGAGCAAAAGT
Downstream 100 bases:
>100_bases GGTAAACCTAACGGAAAAAAACAATCTTCTGGCTTTCTTCTGGCTTTGTAAAGAACTTGGAAGGGTCTATAACTTTTCTC TAACTTCCGCTCACAGAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MAMLGDLQEFSLCDLLHLMEKGKKAGQLSIWAPNGIQRIWFYQGRVVAALTPEEKHRLESLLTRFGLVDEQVVSQLVARG LEEPLGRCLQRQGLISPVDLAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQRP EKDLPEPDSCFWRTSTELPLFKLSALEWSILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSS SASRLQLSESVAEEANPEQVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK
Sequences:
>Translated_296_residues MAMLGDLQEFSLCDLLHLMEKGKKAGQLSIWAPNGIQRIWFYQGRVVAALTPEEKHRLESLLTRFGLVDEQVVSQLVARG LEEPLGRCLQRQGLISPVDLAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQRP EKDLPEPDSCFWRTSTELPLFKLSALEWSILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSS SASRLQLSESVAEEANPEQVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK >Mature_295_residues AMLGDLQEFSLCDLLHLMEKGKKAGQLSIWAPNGIQRIWFYQGRVVAALTPEEKHRLESLLTRFGLVDEQVVSQLVARGL EEPLGRCLQRQGLISPVDLAKLFRHQLQTGLYSLFALESGQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQRPE KDLPEPDSCFWRTSTELPLFKLSALEWSILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSSS ASRLQLSESVAEEANPEQVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32757; Mature: 32626
Theoretical pI: Translated: 7.86; Mature: 7.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMLGDLQEFSLCDLLHLMEKGKKAGQLSIWAPNGIQRIWFYQGRVVAALTPEEKHRLES CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHEEEEECCEEEEEECCHHHHHHHH LLTRFGLVDEQVVSQLVARGLEEPLGRCLQRQGLISPVDLAKLFRHQLQTGLYSLFALES HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQRPEKDLPEPDSCFWRTSTELPL CCEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCH FKLSALEWSILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SASRLQLSESVAEEANPEQVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure AMLGDLQEFSLCDLLHLMEKGKKAGQLSIWAPNGIQRIWFYQGRVVAALTPEEKHRLES CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHEEEEECCEEEEEECCHHHHHHHH LLTRFGLVDEQVVSQLVARGLEEPLGRCLQRQGLISPVDLAKLFRHQLQTGLYSLFALES HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GQFSFLPNVPMPYREMTGLSKSATAAVLEALQQLKLEQRPEKDLPEPDSCFWRTSTELPL CCEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCH FKLSALEWSILEQVSPSRKLTALAQALGADLLEVRYACARLAKLGLISPCEGPTVLARSS HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC SASRLQLSESVAEEANPEQVRERLGARVPGLQDEGGPVKPSLVSRLATLLKGMREK CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA