| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608930
Identifier: 86608930
GI number: 86608930
Start: 1536992
End: 1538086
Strand: Direct
Name: 86608930
Synonym: CYB_1462
Alternate gene names: NA
Gene position: 1536992-1538086 (Clockwise)
Preceding gene: 86608929
Following gene: 86608931
Centisome position: 50.45
GC content: 63.01
Gene sequence:
>1095_bases GTGCATCATCAGTCTAAACCTATGCGGCCTGGCCCCTGGCTCAAGCTCGGCAGCCTTATTCCGCTGCTCTGGCTGTTGTC GGCCTGTCAGGGAACCGAGTGGGGAGAACGGCTGGAGCGCGCTGTACGCCCAGTAGGTCTGCCCACAGCCCAACCTGAGC TGCCGGCATCTCCCTCGCCTCAACCTTTGCCGGGATCCATCCCACCCTCTATCTCGATCCCCACTGCTCCCACCCCTTCC TCACCCCTGCCCAGCCCGGACAGCAGCCGCTTTACAGACTTGGAGCCCGGATCTCTGGTGGCCCGTTCGGTGGGATACCT AGATCGGTTGGGAGTTTTTGCCGATATCTCCAGCAGCGAATTTCAGCCGCAGCGCAGCGTTCGTCGCGGAGAATTTGCCC GTTGGCTGGTGTTGGCCAACAACGCCATCCACGCCGATGAGCCCAGCCGGCAAATCCGCCTGGGATCCCCCTCGGAACGC CCCCTCTTTTTGGATGTGCCGGAAGAGGATCCCAACTTTCGCTACATTCAAGCCCTGGGAGCTGCCGGCATAATTGCCGG AGATGCCAATCGAGAGTTTCGCCCCAACAGCCTGCTGTCGCGGGCAGAGTTGATCCGCATGAAGGTGCCTCTGGACTTAC CTCCCGGCCAGATCAAGGGATCCCGAGCGGAGCTGGAGGAGCGCTGGGGGTTCACCGATGCGGCGCAAATTCCTCCTGAA GCCATTCCTGCTCTAGTAGCCGATCGCAGCCTAGAGAATGCCTCCACCGTGCTGCGCACCTTTGGCCCCATCCGCACCTT CAACCCCTTCGAGCCGGTCAGCCGCGGGGAAGCTGCCATTGCCTTATCGGCTTTTGGGGAACGAACGGCCCAAGACGCCC TACCCCAGCCGCCAGCCCTGCCAGACCCAATCCCTGAGCCTCAGCCTTCTCCCCCTGCCGCAGAACCGCAACAAACGGCC TCTCCTGAGCCGGATCCCAACCCTGCCTCTCCCTCGAATGCCGTTGATGAGCCCTCTGCGCCGGCCCGCCCCCGTTCCTC GGAAGTTGCCCCAGGGGAGGGCAGGATCGTTACCCCACGCCAAACCCAACCCTGA
Upstream 100 bases:
>100_bases CGATCTCCTGCCGATGCAAAGCCTGCTTAACCTGCTGGACGTGCTGGAGGAGTTCAGCCGCAAATGGGCCCAATAGAGAC CAATAGAGAAAGGTAGAGCG
Downstream 100 bases:
>100_bases GGTGAGAGGGATCCCATTGGCGTATGCTGTTGGGCTCTGTCAGCAGATAGAACGCCTCAGAACCCCAGCAGGGATCCCTG CTACGGCTCTTACAAGGAGC
Product: S-layer domain-containing protein
Products: NA
Alternate protein names: S-Layer Region-Like Protein; S-Layer Domain Protein; S-Layer Region-Like; S Layer Domain-Containing Protein
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MHHQSKPMRPGPWLKLGSLIPLLWLLSACQGTEWGERLERAVRPVGLPTAQPELPASPSPQPLPGSIPPSISIPTAPTPS SPLPSPDSSRFTDLEPGSLVARSVGYLDRLGVFADISSSEFQPQRSVRRGEFARWLVLANNAIHADEPSRQIRLGSPSER PLFLDVPEEDPNFRYIQALGAAGIIAGDANREFRPNSLLSRAELIRMKVPLDLPPGQIKGSRAELEERWGFTDAAQIPPE AIPALVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQDALPQPPALPDPIPEPQPSPPAAEPQQTA SPEPDPNPASPSNAVDEPSAPARPRSSEVAPGEGRIVTPRQTQP
Sequences:
>Translated_364_residues MHHQSKPMRPGPWLKLGSLIPLLWLLSACQGTEWGERLERAVRPVGLPTAQPELPASPSPQPLPGSIPPSISIPTAPTPS SPLPSPDSSRFTDLEPGSLVARSVGYLDRLGVFADISSSEFQPQRSVRRGEFARWLVLANNAIHADEPSRQIRLGSPSER PLFLDVPEEDPNFRYIQALGAAGIIAGDANREFRPNSLLSRAELIRMKVPLDLPPGQIKGSRAELEERWGFTDAAQIPPE AIPALVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQDALPQPPALPDPIPEPQPSPPAAEPQQTA SPEPDPNPASPSNAVDEPSAPARPRSSEVAPGEGRIVTPRQTQP >Mature_364_residues MHHQSKPMRPGPWLKLGSLIPLLWLLSACQGTEWGERLERAVRPVGLPTAQPELPASPSPQPLPGSIPPSISIPTAPTPS SPLPSPDSSRFTDLEPGSLVARSVGYLDRLGVFADISSSEFQPQRSVRRGEFARWLVLANNAIHADEPSRQIRLGSPSER PLFLDVPEEDPNFRYIQALGAAGIIAGDANREFRPNSLLSRAELIRMKVPLDLPPGQIKGSRAELEERWGFTDAAQIPPE AIPALVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQDALPQPPALPDPIPEPQPSPPAAEPQQTA SPEPDPNPASPSNAVDEPSAPARPRSSEVAPGEGRIVTPRQTQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39143; Mature: 39143
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01072 SLH_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHQSKPMRPGPWLKLGSLIPLLWLLSACQGTEWGERLERAVRPVGLPTAQPELPASPSP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC QPLPGSIPPSISIPTAPTPSSPLPSPDSSRFTDLEPGSLVARSVGYLDRLGVFADISSSE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCC FQPQRSVRRGEFARWLVLANNAIHADEPSRQIRLGSPSERPLFLDVPEEDPNFRYIQALG CCHHHHHHHHHHEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCHHHHHHC AAGIIAGDANREFRPNSLLSRAELIRMKVPLDLPPGQIKGSRAELEERWGFTDAAQIPPE CCEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCHHHCCHH AIPALVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQDALPQPPAL HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCC PDPIPEPQPSPPAAEPQQTASPEPDPNPASPSNAVDEPSAPARPRSSEVAPGEGRIVTPR CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC QTQP CCCC >Mature Secondary Structure MHHQSKPMRPGPWLKLGSLIPLLWLLSACQGTEWGERLERAVRPVGLPTAQPELPASPSP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC QPLPGSIPPSISIPTAPTPSSPLPSPDSSRFTDLEPGSLVARSVGYLDRLGVFADISSSE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCC FQPQRSVRRGEFARWLVLANNAIHADEPSRQIRLGSPSERPLFLDVPEEDPNFRYIQALG CCHHHHHHHHHHEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCHHHHHHC AAGIIAGDANREFRPNSLLSRAELIRMKVPLDLPPGQIKGSRAELEERWGFTDAAQIPPE CCEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCCCCCHHHCCHH AIPALVADRSLENASTVLRTFGPIRTFNPFEPVSRGEAAIALSAFGERTAQDALPQPPAL HHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCC PDPIPEPQPSPPAAEPQQTASPEPDPNPASPSNAVDEPSAPARPRSSEVAPGEGRIVTPR CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC QTQP CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA