Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608929

Identifier: 86608929

GI number: 86608929

Start: 1536653

End: 1536967

Strand: Direct

Name: 86608929

Synonym: CYB_1461

Alternate gene names: NA

Gene position: 1536653-1536967 (Clockwise)

Preceding gene: 86608928

Following gene: 86608930

Centisome position: 50.44

GC content: 57.14

Gene sequence:

>315_bases
ATGGCCAAAGTGCCCAGTAACCCAGACATTGAGCAATTAGCTGCTGCCATTGGTAAAGAAGTTTACATCGATGTGGCCCG
CTGGCATCTTTACCTGCGCGATGCCCACCTGCATACTCTTTTGGCGGAGCGACTGGCACCCCAGGTGATGGCAGGCAAGG
TGGATGAGGACGCCGTCACAGAGATCTTGCAAGGGATCCCGGTGAAAGTGGGGGGTGGGCGCAAAGAATTGCCCCTGGCC
GATCTCCTGCCGATGCAAAGCCTGCTTAACCTGCTGGACGTGCTGGAGGAGTTCAGCCGCAAATGGGCCCAATAG

Upstream 100 bases:

>100_bases
CTCTACCCGACCGCTCGGCTGCCAGCTCTCCCTGAGGAGTCCTTGGGTTCGGGTTATGATCTGAGGGAGGGGCAGACGCA
ACCCCCAACGGAGCTGAGGG

Downstream 100 bases:

>100_bases
AGACCAATAGAGAAAGGTAGAGCGGTGCATCATCAGTCTAAACCTATGCGGCCTGGCCCCTGGCTCAAGCTCGGCAGCCT
TATTCCGCTGCTCTGGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MAKVPSNPDIEQLAAAIGKEVYIDVARWHLYLRDAHLHTLLAERLAPQVMAGKVDEDAVTEILQGIPVKVGGGRKELPLA
DLLPMQSLLNLLDVLEEFSRKWAQ

Sequences:

>Translated_104_residues
MAKVPSNPDIEQLAAAIGKEVYIDVARWHLYLRDAHLHTLLAERLAPQVMAGKVDEDAVTEILQGIPVKVGGGRKELPLA
DLLPMQSLLNLLDVLEEFSRKWAQ
>Mature_103_residues
AKVPSNPDIEQLAAAIGKEVYIDVARWHLYLRDAHLHTLLAERLAPQVMAGKVDEDAVTEILQGIPVKVGGGRKELPLAD
LLPMQSLLNLLDVLEEFSRKWAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021518 [H]

Pfam domain/function: PF11378 DUF3181 [H]

EC number: NA

Molecular weight: Translated: 11550; Mature: 11418

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVPSNPDIEQLAAAIGKEVYIDVARWHLYLRDAHLHTLLAERLAPQVMAGKVDEDAVT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
EILQGIPVKVGGGRKELPLADLLPMQSLLNLLDVLEEFSRKWAQ
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKVPSNPDIEQLAAAIGKEVYIDVARWHLYLRDAHLHTLLAERLAPQVMAGKVDEDAVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
EILQGIPVKVGGGRKELPLADLLPMQSLLNLLDVLEEFSRKWAQ
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]