| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608923
Identifier: 86608923
GI number: 86608923
Start: 1530948
End: 1533032
Strand: Reverse
Name: 86608923
Synonym: CYB_1455
Alternate gene names: NA
Gene position: 1533032-1530948 (Counterclockwise)
Preceding gene: 86608924
Following gene: 86608922
Centisome position: 50.32
GC content: 63.88
Gene sequence:
>2085_bases GTGCGGGTGCCCCTCGACTATTATCGGGTTTTGATGCTGTCGGCACGGGCAGATGAGCATCAGATTGAACAGGCATACCG GGAGCGGATCGATCTCAAGCCGGGCGAGCGCTCCTGGCTGTCGGGGTTCTCGCCACAGGCTGTGGAAGCTCGCGCCCAGA TGATCCAAGAGGCGGCTTCTGTGCTGCTGAACCCTGAGGCACGACGAAACTACGACGAACACCTCATGCCAACGGATCCC ACCTTGACGGTGGAGGAGGCGCACCTACCGGGAGTGCTGTGCTTGTATTGCGAAGCCGGAGAGTACCAGGCTGCGTTGGA CTTGGCTCAACACCTGTTGGAGCAGGGCCACCCTGCTCGTTCCGATGCCATTTTGGCGCGGGCCATCGCTCGTCTGGAAC TGGGTCGAGAAGCCTGGCAACAGGGATCCTATGAAGAGGCGGCGCGTTCCCTACAGGCGGGCTTGGCGGAGCTGGAGGAG TATCAGGCCTTTCCGCAGATGCAAGCGGAGATCCGTATCGATTTGGGCAAGCTGCGTCCCTATCGCATTTTGCAACTCCT CAGCCACGAGGCCCATGCTCCCGCCCCAGCCGGAAGAGAGACTCTTGTGCTCCGCACCGCTGATGCGAATGGGGAGCGGC AGCAGGGACTGGCTCTCCTCAAAGCCATGCTGGACGAACGGGGCGGCATCGAGGGGATGGGGCAAGATGGCTCTGGCCTC AGCACCGAAGATTTCCTGCGCTTTATCCAACGGGTACGTCGCCACCTCACCCTCAAAGAACAGCAGGAGTTGTTCGAGCG GGAGGCTGAGCGTCCCTCGATGGTGGCCGCCTACTTGGCCGTGCAGGTGTTGCTGGCGGCAGGTTATCTGGAAAACCGCC CGGCTCTGGTGCGGCGTGCTCGCGGCTACCTGGCTCGTCTGGCGCAGCGGCAGGATGTGCATCTGGAGCAGGCCATCTGT AGTCTGTTGCTGGGGCAGACCGAAGACGCGCTCGCCCATCTGCGCTCCACCCAAGAAGTAGAGGCCTTGCAGTTTATCGA AGAACACTCCGCCGGTTCTCCCGACCATCTGCCGGGTCTGTGCCGCTTCACAGAAAAATGGTTTCAGGAGGAGGTGTTCC CGGAGTTCCGCGGTCTGGAAGCCGCCCAAGTGACGTTGCAAGCCTACTTCGACAACCCCCAAGTACAAGCTTACCTGGAC GAAATGCCCAGCCGCGAAGACCCGCCGGCAGGGATGCTCTCTCCCAGTGCTCCGCACCGCTGTCGCGAACAAGCCCCCCA TCCCCCACCTCATTTGCCTGCCGTGGTGGGTCCTGAGCCAACCCAGGAATTGTATCGCCCACCCGCCCCTTGGCAACAGG GGGTGCCAGAACCCCCGCGCCTCTCGGATTTGCCCTCTTACCGCAGCACCCCCAAGGCGGGCGTCTCTGCTCTTGCGGAT GAGAGTTCTAGTGCTCCGCACCGCTGTCGCGAACGCGCCCAAGACCGTTCCCCTCAGGGGGACGGAGTCCAGGGCCTAAG GTCCGCTGGCGCGATCGGTTTGCAGGATGTGGAGCGTTACCGCCGCAGCCGCTTGGGATCCCGTAAGCGTCCTGCCCTTC CCGCCGTGGGCTTCGCACCGCTGACGCGAGTGGCCGGGGTAGTTGGTGTGGGCATTCTCTCCCTGCTGGTCATCTGGCAA ATGCTGCGGGGCCTCTTCACGCCGCCGCCGGCACCACCGCTGGAGCAACCCCAGGTGCAAATTGAGCAGCCGCCGGTTGA CATATCGCTACGCGACGCCTCCGCGAACGACAATCCCGGCCAGACAGAACCCGCTCCCCCGCCTGAGCTAACTGGCCCTC TGGCGGAGTGGCAAGGAGTACAACAGGTGCGGGTGGTCTCCAACGATGGCCTCAACATTCGCCAGCAACCCAGCCTGACG GGAGCCATTGTCGGGACAGCCCCACGCCAAGCCCTGCTGCGGGTGGTGGAGGTGCAGGCTGGGGAGGGACAGGTGCCCGT CTGGCTGCGCATCGAGCGAGATGGCGCGCCCGGGGGATGGGTCGCCGCCCAGTCGGGCTCCACCCGTCTGGTGGAACGGC TCTAG
Upstream 100 bases:
>100_bases TTACCCACGAAAAGGACTACAGTTAAGTCGATGCGGGTAAGTTGTCCAAGGACTCCGTCCCGCTGGCACGAACAGGAGAG CGCGGACAAAAACCATGACG
Downstream 100 bases:
>100_bases CTCTGATACATTTACGCTGAACACTGCTGAACATCACTGTTCAACTATGCAGCGATAGCATCCTGTTTGTTTCCAAACAG AATGGCGGTATCCCGCAAAG
Product: DnaJ domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MRVPLDYYRVLMLSARADEHQIEQAYRERIDLKPGERSWLSGFSPQAVEARAQMIQEAASVLLNPEARRNYDEHLMPTDP TLTVEEAHLPGVLCLYCEAGEYQAALDLAQHLLEQGHPARSDAILARAIARLELGREAWQQGSYEEAARSLQAGLAELEE YQAFPQMQAEIRIDLGKLRPYRILQLLSHEAHAPAPAGRETLVLRTADANGERQQGLALLKAMLDERGGIEGMGQDGSGL STEDFLRFIQRVRRHLTLKEQQELFEREAERPSMVAAYLAVQVLLAAGYLENRPALVRRARGYLARLAQRQDVHLEQAIC SLLLGQTEDALAHLRSTQEVEALQFIEEHSAGSPDHLPGLCRFTEKWFQEEVFPEFRGLEAAQVTLQAYFDNPQVQAYLD EMPSREDPPAGMLSPSAPHRCREQAPHPPPHLPAVVGPEPTQELYRPPAPWQQGVPEPPRLSDLPSYRSTPKAGVSALAD ESSSAPHRCRERAQDRSPQGDGVQGLRSAGAIGLQDVERYRRSRLGSRKRPALPAVGFAPLTRVAGVVGVGILSLLVIWQ MLRGLFTPPPAPPLEQPQVQIEQPPVDISLRDASANDNPGQTEPAPPPELTGPLAEWQGVQQVRVVSNDGLNIRQQPSLT GAIVGTAPRQALLRVVEVQAGEGQVPVWLRIERDGAPGGWVAAQSGSTRLVERL
Sequences:
>Translated_694_residues MRVPLDYYRVLMLSARADEHQIEQAYRERIDLKPGERSWLSGFSPQAVEARAQMIQEAASVLLNPEARRNYDEHLMPTDP TLTVEEAHLPGVLCLYCEAGEYQAALDLAQHLLEQGHPARSDAILARAIARLELGREAWQQGSYEEAARSLQAGLAELEE YQAFPQMQAEIRIDLGKLRPYRILQLLSHEAHAPAPAGRETLVLRTADANGERQQGLALLKAMLDERGGIEGMGQDGSGL STEDFLRFIQRVRRHLTLKEQQELFEREAERPSMVAAYLAVQVLLAAGYLENRPALVRRARGYLARLAQRQDVHLEQAIC SLLLGQTEDALAHLRSTQEVEALQFIEEHSAGSPDHLPGLCRFTEKWFQEEVFPEFRGLEAAQVTLQAYFDNPQVQAYLD EMPSREDPPAGMLSPSAPHRCREQAPHPPPHLPAVVGPEPTQELYRPPAPWQQGVPEPPRLSDLPSYRSTPKAGVSALAD ESSSAPHRCRERAQDRSPQGDGVQGLRSAGAIGLQDVERYRRSRLGSRKRPALPAVGFAPLTRVAGVVGVGILSLLVIWQ MLRGLFTPPPAPPLEQPQVQIEQPPVDISLRDASANDNPGQTEPAPPPELTGPLAEWQGVQQVRVVSNDGLNIRQQPSLT GAIVGTAPRQALLRVVEVQAGEGQVPVWLRIERDGAPGGWVAAQSGSTRLVERL >Mature_694_residues MRVPLDYYRVLMLSARADEHQIEQAYRERIDLKPGERSWLSGFSPQAVEARAQMIQEAASVLLNPEARRNYDEHLMPTDP TLTVEEAHLPGVLCLYCEAGEYQAALDLAQHLLEQGHPARSDAILARAIARLELGREAWQQGSYEEAARSLQAGLAELEE YQAFPQMQAEIRIDLGKLRPYRILQLLSHEAHAPAPAGRETLVLRTADANGERQQGLALLKAMLDERGGIEGMGQDGSGL STEDFLRFIQRVRRHLTLKEQQELFEREAERPSMVAAYLAVQVLLAAGYLENRPALVRRARGYLARLAQRQDVHLEQAIC SLLLGQTEDALAHLRSTQEVEALQFIEEHSAGSPDHLPGLCRFTEKWFQEEVFPEFRGLEAAQVTLQAYFDNPQVQAYLD EMPSREDPPAGMLSPSAPHRCREQAPHPPPHLPAVVGPEPTQELYRPPAPWQQGVPEPPRLSDLPSYRSTPKAGVSALAD ESSSAPHRCRERAQDRSPQGDGVQGLRSAGAIGLQDVERYRRSRLGSRKRPALPAVGFAPLTRVAGVVGVGILSLLVIWQ MLRGLFTPPPAPPLEQPQVQIEQPPVDISLRDASANDNPGQTEPAPPPELTGPLAEWQGVQQVRVVSNDGLNIRQQPSLT GAIVGTAPRQALLRVVEVQAGEGQVPVWLRIERDGAPGGWVAAQSGSTRLVERL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76642; Mature: 76642
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVPLDYYRVLMLSARADEHQIEQAYRERIDLKPGERSWLSGFSPQAVEARAQMIQEAAS CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH VLLNPEARRNYDEHLMPTDPTLTVEEAHLPGVLCLYCEAGEYQAALDLAQHLLEQGHPAR HHCCCHHHCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC SDAILARAIARLELGREAWQQGSYEEAARSLQAGLAELEEYQAFPQMQAEIRIDLGKLRP HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCH YRILQLLSHEAHAPAPAGRETLVLRTADANGERQQGLALLKAMLDERGGIEGMGQDGSGL HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC STEDFLRFIQRVRRHLTLKEQQELFEREAERPSMVAAYLAVQVLLAAGYLENRPALVRRA CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH RGYLARLAQRQDVHLEQAICSLLLGQTEDALAHLRSTQEVEALQFIEEHSAGSPDHLPGL HHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH CRFTEKWFQEEVFPEFRGLEAAQVTLQAYFDNPQVQAYLDEMPSREDPPAGMLSPSAPHR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH CREQAPHPPPHLPAVVGPEPTQELYRPPAPWQQGVPEPPRLSDLPSYRSTPKAGVSALAD HHHCCCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHC ESSSAPHRCRERAQDRSPQGDGVQGLRSAGAIGLQDVERYRRSRLGSRKRPALPAVGFAP CCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH LTRVAGVVGVGILSLLVIWQMLRGLFTPPPAPPLEQPQVQIEQPPVDISLRDASANDNPG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCC QTEPAPPPELTGPLAEWQGVQQVRVVSNDGLNIRQQPSLTGAIVGTAPRQALLRVVEVQA CCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCC GEGQVPVWLRIERDGAPGGWVAAQSGSTRLVERL CCCCCCEEEEEECCCCCCCEEEECCCCHHHHHCC >Mature Secondary Structure MRVPLDYYRVLMLSARADEHQIEQAYRERIDLKPGERSWLSGFSPQAVEARAQMIQEAAS CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH VLLNPEARRNYDEHLMPTDPTLTVEEAHLPGVLCLYCEAGEYQAALDLAQHLLEQGHPAR HHCCCHHHCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC SDAILARAIARLELGREAWQQGSYEEAARSLQAGLAELEEYQAFPQMQAEIRIDLGKLRP HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCH YRILQLLSHEAHAPAPAGRETLVLRTADANGERQQGLALLKAMLDERGGIEGMGQDGSGL HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC STEDFLRFIQRVRRHLTLKEQQELFEREAERPSMVAAYLAVQVLLAAGYLENRPALVRRA CHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH RGYLARLAQRQDVHLEQAICSLLLGQTEDALAHLRSTQEVEALQFIEEHSAGSPDHLPGL HHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH CRFTEKWFQEEVFPEFRGLEAAQVTLQAYFDNPQVQAYLDEMPSREDPPAGMLSPSAPHR HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHH CREQAPHPPPHLPAVVGPEPTQELYRPPAPWQQGVPEPPRLSDLPSYRSTPKAGVSALAD HHHCCCCCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHC ESSSAPHRCRERAQDRSPQGDGVQGLRSAGAIGLQDVERYRRSRLGSRKRPALPAVGFAP CCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH LTRVAGVVGVGILSLLVIWQMLRGLFTPPPAPPLEQPQVQIEQPPVDISLRDASANDNPG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCC QTEPAPPPELTGPLAEWQGVQQVRVVSNDGLNIRQQPSLTGAIVGTAPRQALLRVVEVQA CCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCC GEGQVPVWLRIERDGAPGGWVAAQSGSTRLVERL CCCCCCEEEEEECCCCCCCEEEECCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA