| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608891
Identifier: 86608891
GI number: 86608891
Start: 1491837
End: 1493015
Strand: Reverse
Name: 86608891
Synonym: CYB_1423
Alternate gene names: NA
Gene position: 1493015-1491837 (Counterclockwise)
Preceding gene: 86608892
Following gene: 86608889
Centisome position: 49.0
GC content: 63.95
Gene sequence:
>1179_bases ATGAGCCATCCCTACACCAGCCTCCTGCTCATCCCCACCGGCATTGGTGCCCGCATCGGTGGTTTTGCCGGGGATGCCCT GCCTGTTGCCCGCACCCTGGCAGCAGCCGCAGAGCGGGTCATTACCCATCCCAACGTGTTAAACGGAGCCAGTTTGTTTT GGCCGATGGGGAACGTGTTGTACGTGGAAGGGTACGGCCTGGATCAGTTCTGTGCGGGAGTGTGGAATTTGCGGCCAGTG CGCCAAAACTGTGTTGGGGTGGTGCTGGATGCCGGGATCCCCCCTGATCTGCAACAACGCCACCTGCAGGTGATGCAAGC CGCTCAGGCCACCTTGGGGCTCAACATCGGCCCCTGGCGCTTGACCCGCCAACCCTTGGGCGTTTCCGTCAGCTTCTCCC CCTCCGGGGCCAGCCAGGGATCCCTAGCCCGGCCCGATGCTCTCTTGGAGACTGCCCAGGAGCTGGTTCGCCTGGGGGCA GAGGCCATTGCCGTGGTGGCCCGCTTTCCGGATGACTTGGACTTCAGCCAGTACGAGCAGGGAAGGGGGGTGGATCCCCT GGCCGGCGTCGAAGCCCTGATCAGCCACCTGGTGGTGCGGGAGTTGCGGATCCCTTGTGCCCATGCCCCCGCTTTCTACC CTGAGACTTTCCCCAAGCCGGTTCACCCCCGCGCTGCTGCTGAAGAGGTGGGGTTTACCTTCTTGCCTTCGGTTTTGGTG GGCCTCAGCTACGCTCCCCAGTTCGTCAAGAGCGGGGATCCCGCCCAACCGGGCGACCTGACAGCAGAGCAGGTGGACAG CGTCATTGCCCCGGCCACTGCCTTTGGGGGGCCTGGCTTGCTGCACCTGGCCAGCCGTTATGGCTCCGCAATGCTGTCGC GACCGCGCCACAATGCTCCGCCGCTGACGCGAACGGACGGAGTTCTTACTCGTCCTCCGCTTTTCATTGCCGTCGAGGAA AACACCACCGTGATGCAGGTGCATCCCCGCCAGTTGGGGATCCCTCATGTATCGGTAACCTCCTATCTAGAGGCGATTGG AGTGGTGGTGGCCCATCGAGCAGGAGTGGCCTGGTCGTCGCTACGGCTCTCCCCCTCCACCCCGGAAAAGCTGGGATCCC ACACTTGCGCCGTTCGCGGTCGCGGTGCGGAGCACTTGAGCGGGACGGAGTCCCAGTAG
Upstream 100 bases:
>100_bases GGCGGGCCGAGGCCCTAGCCCAGCAGATCCTGTCCGTCCGGCGTTAGCGGTGCGGTTCCCGTTCGCGTGTAGCAGCATAG AGTGCTGTAGACATAGCAGC
Downstream 100 bases:
>100_bases GCTACCGGTCGCGTTAGCGGGACGGAGTCCATGAGCAGAGGGGAGATGGCAGGGGATCCGCCGGGTTTAGGCCGGCAAAC CACTCCGACAGGGCGGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MSHPYTSLLLIPTGIGARIGGFAGDALPVARTLAAAAERVITHPNVLNGASLFWPMGNVLYVEGYGLDQFCAGVWNLRPV RQNCVGVVLDAGIPPDLQQRHLQVMQAAQATLGLNIGPWRLTRQPLGVSVSFSPSGASQGSLARPDALLETAQELVRLGA EAIAVVARFPDDLDFSQYEQGRGVDPLAGVEALISHLVVRELRIPCAHAPAFYPETFPKPVHPRAAAEEVGFTFLPSVLV GLSYAPQFVKSGDPAQPGDLTAEQVDSVIAPATAFGGPGLLHLASRYGSAMLSRPRHNAPPLTRTDGVLTRPPLFIAVEE NTTVMQVHPRQLGIPHVSVTSYLEAIGVVVAHRAGVAWSSLRLSPSTPEKLGSHTCAVRGRGAEHLSGTESQ
Sequences:
>Translated_392_residues MSHPYTSLLLIPTGIGARIGGFAGDALPVARTLAAAAERVITHPNVLNGASLFWPMGNVLYVEGYGLDQFCAGVWNLRPV RQNCVGVVLDAGIPPDLQQRHLQVMQAAQATLGLNIGPWRLTRQPLGVSVSFSPSGASQGSLARPDALLETAQELVRLGA EAIAVVARFPDDLDFSQYEQGRGVDPLAGVEALISHLVVRELRIPCAHAPAFYPETFPKPVHPRAAAEEVGFTFLPSVLV GLSYAPQFVKSGDPAQPGDLTAEQVDSVIAPATAFGGPGLLHLASRYGSAMLSRPRHNAPPLTRTDGVLTRPPLFIAVEE NTTVMQVHPRQLGIPHVSVTSYLEAIGVVVAHRAGVAWSSLRLSPSTPEKLGSHTCAVRGRGAEHLSGTESQ >Mature_391_residues SHPYTSLLLIPTGIGARIGGFAGDALPVARTLAAAAERVITHPNVLNGASLFWPMGNVLYVEGYGLDQFCAGVWNLRPVR QNCVGVVLDAGIPPDLQQRHLQVMQAAQATLGLNIGPWRLTRQPLGVSVSFSPSGASQGSLARPDALLETAQELVRLGAE AIAVVARFPDDLDFSQYEQGRGVDPLAGVEALISHLVVRELRIPCAHAPAFYPETFPKPVHPRAAAEEVGFTFLPSVLVG LSYAPQFVKSGDPAQPGDLTAEQVDSVIAPATAFGGPGLLHLASRYGSAMLSRPRHNAPPLTRTDGVLTRPPLFIAVEEN TTVMQVHPRQLGIPHVSVTSYLEAIGVVVAHRAGVAWSSLRLSPSTPEKLGSHTCAVRGRGAEHLSGTESQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021763 [H]
Pfam domain/function: PF11805 DUF3326 [H]
EC number: NA
Molecular weight: Translated: 41532; Mature: 41401
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHPYTSLLLIPTGIGARIGGFAGDALPVARTLAAAAERVITHPNVLNGASLFWPMGNVL CCCCCCEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCCEE YVEGYGLDQFCAGVWNLRPVRQNCVGVVLDAGIPPDLQQRHLQVMQAAQATLGLNIGPWR EEECCCHHHHHHHHHCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LTRQPLGVSVSFSPSGASQGSLARPDALLETAQELVRLGAEAIAVVARFPDDLDFSQYEQ EECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHC GRGVDPLAGVEALISHLVVRELRIPCAHAPAFYPETFPKPVHPRAAAEEVGFTFLPSVLV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHH GLSYAPQFVKSGDPAQPGDLTAEQVDSVIAPATAFGGPGLLHLASRYGSAMLSRPRHNAP HHHHCCHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC PLTRTDGVLTRPPLFIAVEENTTVMQVHPRQLGIPHVSVTSYLEAIGVVVAHRAGVAWSS CCCCCCCCEECCCEEEEEECCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEHE LRLSPSTPEKLGSHTCAVRGRGAEHLSGTESQ EEECCCCHHHHCCCEEEEECCCCHHCCCCCCC >Mature Secondary Structure SHPYTSLLLIPTGIGARIGGFAGDALPVARTLAAAAERVITHPNVLNGASLFWPMGNVL CCCCCEEEEEECCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHEECCCCEE YVEGYGLDQFCAGVWNLRPVRQNCVGVVLDAGIPPDLQQRHLQVMQAAQATLGLNIGPWR EEECCCHHHHHHHHHCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LTRQPLGVSVSFSPSGASQGSLARPDALLETAQELVRLGAEAIAVVARFPDDLDFSQYEQ EECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHC GRGVDPLAGVEALISHLVVRELRIPCAHAPAFYPETFPKPVHPRAAAEEVGFTFLPSVLV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHH GLSYAPQFVKSGDPAQPGDLTAEQVDSVIAPATAFGGPGLLHLASRYGSAMLSRPRHNAP HHHHCCHHHHCCCCCCCCCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC PLTRTDGVLTRPPLFIAVEENTTVMQVHPRQLGIPHVSVTSYLEAIGVVVAHRAGVAWSS CCCCCCCCEECCCEEEEEECCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEHE LRLSPSTPEKLGSHTCAVRGRGAEHLSGTESQ EEECCCCHHHHCCCEEEEECCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3041005 [H]