| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608823
Identifier: 86608823
GI number: 86608823
Start: 1419042
End: 1419602
Strand: Direct
Name: 86608823
Synonym: CYB_1349
Alternate gene names: NA
Gene position: 1419042-1419602 (Clockwise)
Preceding gene: 86608816
Following gene: 86608824
Centisome position: 46.58
GC content: 60.25
Gene sequence:
>561_bases GTGCCGGGGCGCAATCTCGATCCTGGGGCGCAAATCCGGGTGCGTAACGAGCTGGTCAAGACCTGTGGGGACTATCGTTG CGAAGGCTATCGCTTTTCGGTACGGGTACCGATCAGCCCTGAAGACACCCTGGAAACTCTGCTGGGGCGGCTGGATACGG AGATGCTGCGGGAGGTGGATCGGGTGTTTCAAACTCGGCCCGATCTGAATCGGGTCATTGTCGATGGCTACGTCTTCTCG GGTACTCCCGCTTTTGTCAGCCGGGAAGTGCTGCTGCAAACAATGTTTGTGCCCCGTCACCGTTGGGAAGTGGGGCGCTT TGGGCCAGAGCAAGATGCGATTTTCTATGCCGAGCTGTTGGGACAGGTGACGCCCTTTCTAACTCCATCCCCAACCCCCA CGCCTACACCTGGGCCTGTGCCTGGAGAAGGTGTGCCCCCTCTGCCCCCGCCTCCTGGGGAAACTCCTCCCATAGAGGCA ACGCCTACCCCTCAAGAAACCCCAGCCGCTCCACCTCCACCTCAAGGGGATGTAATTCAGCGGCAGCCGATTCAGCCCTG A
Upstream 100 bases:
>100_bases ATTTGGCTTGTTTTTCGGATCCCTAGTTTGGGCAGGATGGGCAAGTCAACTCCAGCTATGGGCCCAGCCGGTCGAACAGC AACCCCAGGAGGAAGTCCTT
Downstream 100 bases:
>100_bases TGGGTTTGTTGGGTAGCTGAGTCTGGGTTGTGAAGGATCCCTCGTTATAGTCATTTCAAACCAGATTGAGATACTCCCCA AGCGCTCCGCGCCGCTGCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 186; Mature: 185
Protein sequence:
>186_residues MPGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVDRVFQTRPDLNRVIVDGYVFS GTPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELLGQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEA TPTPQETPAAPPPPQGDVIQRQPIQP
Sequences:
>Translated_186_residues MPGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVDRVFQTRPDLNRVIVDGYVFS GTPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELLGQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEA TPTPQETPAAPPPPQGDVIQRQPIQP >Mature_185_residues PGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVDRVFQTRPDLNRVIVDGYVFSG TPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELLGQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEAT PTPQETPAAPPPPQGDVIQRQPIQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20539; Mature: 20407
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVD CCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHH RVFQTRPDLNRVIVDGYVFSGTPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELL HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHH GQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEATPTPQETPAAPPPPQGDVIQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RQPIQP CCCCCC >Mature Secondary Structure PGRNLDPGAQIRVRNELVKTCGDYRCEGYRFSVRVPISPEDTLETLLGRLDTEMLREVD CCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHHHHHH RVFQTRPDLNRVIVDGYVFSGTPAFVSREVLLQTMFVPRHRWEVGRFGPEQDAIFYAELL HHHHCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHH GQVTPFLTPSPTPTPTPGPVPGEGVPPLPPPPGETPPIEATPTPQETPAAPPPPQGDVIQ HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RQPIQP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA