Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608816

Identifier: 86608816

GI number: 86608816

Start: 1409784

End: 1411427

Strand: Direct

Name: 86608816

Synonym: CYB_1342

Alternate gene names: NA

Gene position: 1409784-1411427 (Clockwise)

Preceding gene: 86608814

Following gene: 86608823

Centisome position: 46.27

GC content: 61.01

Gene sequence:

>1644_bases
ATGCAAGTCCAGCTTCATTCTCGGCTGCGCCCTCTCTCTCTGACGTTGATGGCGGTGGGGAGCTCTTGGCTCCTGGGATC
CTGCCAACTCAGAGGGCCACAGGTACAGTTGACCGGCGATGTTCTGCCGGAAACCGCGCTGGTTCCCCAGTCGGCGCCCC
TGGTGCTGACCTTTTCTACCCAACCGGAAGAATCTTTTCGCACTCACCCTGACCTTTTGGCCCAGTGGGAGAGCTGGACG
GCAGAAGCTTTGGCTGAAACCGGCAAGGAGTTCTCTCGGGAAGAGATGCAAGCTTGGGCTGGCGAGCAATTCACGATGGC
AGTGGTGATCCCCAATCTGGTGCCCGGAGCTGCCGAGCCGGTGCCTGGGATCCTGTTTGGAGCCAGCACCCGCAACGCTG
ATTTGTCTGGGCAATTCTTGGCCCAGGTGCGGCAACAGGCAGCAGCAGAAGGGGCCAACTTCGAGCAGCGCCAGGAGCAG
GGGGTCACCCTCTATGTGCAAACCAACGGGGAGCCGGGCGAGCGATGGGTAACTGCTGAGTTTGGCAACCGCTTTGTGGC
AGTGGCCAACGACCCAAGGGTGATGCAGCAGGCGATTGCTGTGTATCGCGGCGAAGCAGAGCCGATTGGCCGCTCCGAAA
GTTTCCGCACCGCTGTTGGCGATCTGTATAAGAGCGGCACGCTGGCCTTTGCCTACTTCAACTTCCAGGCTTTGCAGGAG
GATCCCGAATCTTTCAAAGACTGGATGCAGGATCTGGATCCGGCGACGCTGGGATCCCTGCAACCCCTGCGCTCTTTGGC
CATGGCTGCCCACTGGCAGGAGCAGGGCCTACGGCTGCGCATGTTGACCCAGACCGATCCGAAAACCCAGGTGCAGGGGG
GGTGGCAACCGGCTCGCGGCGAACTTATTCAGCGGCTGCCCGGCAATGCCCTGGCGGTGCTGACCACCCAACAGATCGCC
CAGCGCTGGCAAGCCGTTATGCCTGAGCTGGAGAAAGATCCGCCGGTCAAGGAGTCGTTAGAGGAGCTGCGGGCTGAGTT
TCGCGCCAATACCCGTCTGGACTTGGAAAAAGATCTGCTGGCTTGGATGGATGGGGAGATGGCCCTGCTGGTGGCACCGG
ATGCCCAGGCCCATCCCCTGTTGCAGGGCATGGGAGCAGCCTTGGTGATCGAGACCAGCCAAAAAGACAAGGCCAACGCG
GCCCTGACTCAGTTGGATCGGCTGGCCCAAGAATCGGGAGTAGGGGTAACGGAGGCGGGTGGACAGGTGACGTGGGCGGA
TCCCTTGTTTAACCGCCCGCTTTTGACCCGCGCCTGGGAAGGCAACTATTTGATCGTGACTAGCAGCACGGCGGCGCTGC
AAACCCTCGCCCAACGCCAGGGCAATTTGCTTCCCCAAACCGAGCCGCTGAAAACCCTCTACGATCAGTTGCCCAAGCCC
AACTACGGCTACTTTTTGCTGAATTGGCAAGGGATCCGAACAGTGCTGGAGGCCACACTACCGGGTGGTTTGGCAGGCTT
GGAGCCGGAGGCCCGTGAGCTGCTGACCCGCATCGATGGGCTGGGCATTACCAGCTACCCTGCCGGGGATCACGCCTTTG
GGTTGGAGCTGCTGGTTACTGTGCCACCAAAGCCCCAGCGATAA

Upstream 100 bases:

>100_bases
CTAGAGTGGACTATTTTTTCACTTACAGAAAATTTGGGTTTGCAGGCTCATGCCTAGATGCTACGATTGGCTATATCCAC
TAGCTGCTTAGGTAGCCGCC

Downstream 100 bases:

>100_bases
AACCGTGTCTCACGTTCTTCAGTCTTCCTAGGGGTTGGGGGTGAGGGCTATAGCCGAATTAGGCCATAGGTAAGGGCATA
GCGAACCAGCTCGGTGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT
AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ
GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE
DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA
QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA
ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP
NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR

Sequences:

>Translated_547_residues
MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT
AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ
GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE
DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA
QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA
ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP
NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR
>Mature_547_residues
MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT
AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ
GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE
DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA
QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA
ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP
NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60077; Mature: 60077

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFST
CEEEHHHCCCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECC
QPEESFRTHPDLLAQWESWTAEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEP
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
VPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQGVTLYVQTNGEPGERWVTAE
CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCCCCCEEEEEE
FGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHC
DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARG
CHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH
ELIQRLPGNALAVLTTQQIAQRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLL
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANAALTQLDRLAQESGVGVTEAG
HHCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC
GQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP
CEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVT
CCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
VPPKPQR
CCCCCCC
>Mature Secondary Structure
MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFST
CEEEHHHCCCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECC
QPEESFRTHPDLLAQWESWTAEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEP
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
VPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQGVTLYVQTNGEPGERWVTAE
CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCCCCCEEEEEE
FGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHC
DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARG
CHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH
ELIQRLPGNALAVLTTQQIAQRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLL
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
AWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANAALTQLDRLAQESGVGVTEAG
HHCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC
GQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP
CEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVT
CCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
VPPKPQR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA