| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608816
Identifier: 86608816
GI number: 86608816
Start: 1409784
End: 1411427
Strand: Direct
Name: 86608816
Synonym: CYB_1342
Alternate gene names: NA
Gene position: 1409784-1411427 (Clockwise)
Preceding gene: 86608814
Following gene: 86608823
Centisome position: 46.27
GC content: 61.01
Gene sequence:
>1644_bases ATGCAAGTCCAGCTTCATTCTCGGCTGCGCCCTCTCTCTCTGACGTTGATGGCGGTGGGGAGCTCTTGGCTCCTGGGATC CTGCCAACTCAGAGGGCCACAGGTACAGTTGACCGGCGATGTTCTGCCGGAAACCGCGCTGGTTCCCCAGTCGGCGCCCC TGGTGCTGACCTTTTCTACCCAACCGGAAGAATCTTTTCGCACTCACCCTGACCTTTTGGCCCAGTGGGAGAGCTGGACG GCAGAAGCTTTGGCTGAAACCGGCAAGGAGTTCTCTCGGGAAGAGATGCAAGCTTGGGCTGGCGAGCAATTCACGATGGC AGTGGTGATCCCCAATCTGGTGCCCGGAGCTGCCGAGCCGGTGCCTGGGATCCTGTTTGGAGCCAGCACCCGCAACGCTG ATTTGTCTGGGCAATTCTTGGCCCAGGTGCGGCAACAGGCAGCAGCAGAAGGGGCCAACTTCGAGCAGCGCCAGGAGCAG GGGGTCACCCTCTATGTGCAAACCAACGGGGAGCCGGGCGAGCGATGGGTAACTGCTGAGTTTGGCAACCGCTTTGTGGC AGTGGCCAACGACCCAAGGGTGATGCAGCAGGCGATTGCTGTGTATCGCGGCGAAGCAGAGCCGATTGGCCGCTCCGAAA GTTTCCGCACCGCTGTTGGCGATCTGTATAAGAGCGGCACGCTGGCCTTTGCCTACTTCAACTTCCAGGCTTTGCAGGAG GATCCCGAATCTTTCAAAGACTGGATGCAGGATCTGGATCCGGCGACGCTGGGATCCCTGCAACCCCTGCGCTCTTTGGC CATGGCTGCCCACTGGCAGGAGCAGGGCCTACGGCTGCGCATGTTGACCCAGACCGATCCGAAAACCCAGGTGCAGGGGG GGTGGCAACCGGCTCGCGGCGAACTTATTCAGCGGCTGCCCGGCAATGCCCTGGCGGTGCTGACCACCCAACAGATCGCC CAGCGCTGGCAAGCCGTTATGCCTGAGCTGGAGAAAGATCCGCCGGTCAAGGAGTCGTTAGAGGAGCTGCGGGCTGAGTT TCGCGCCAATACCCGTCTGGACTTGGAAAAAGATCTGCTGGCTTGGATGGATGGGGAGATGGCCCTGCTGGTGGCACCGG ATGCCCAGGCCCATCCCCTGTTGCAGGGCATGGGAGCAGCCTTGGTGATCGAGACCAGCCAAAAAGACAAGGCCAACGCG GCCCTGACTCAGTTGGATCGGCTGGCCCAAGAATCGGGAGTAGGGGTAACGGAGGCGGGTGGACAGGTGACGTGGGCGGA TCCCTTGTTTAACCGCCCGCTTTTGACCCGCGCCTGGGAAGGCAACTATTTGATCGTGACTAGCAGCACGGCGGCGCTGC AAACCCTCGCCCAACGCCAGGGCAATTTGCTTCCCCAAACCGAGCCGCTGAAAACCCTCTACGATCAGTTGCCCAAGCCC AACTACGGCTACTTTTTGCTGAATTGGCAAGGGATCCGAACAGTGCTGGAGGCCACACTACCGGGTGGTTTGGCAGGCTT GGAGCCGGAGGCCCGTGAGCTGCTGACCCGCATCGATGGGCTGGGCATTACCAGCTACCCTGCCGGGGATCACGCCTTTG GGTTGGAGCTGCTGGTTACTGTGCCACCAAAGCCCCAGCGATAA
Upstream 100 bases:
>100_bases CTAGAGTGGACTATTTTTTCACTTACAGAAAATTTGGGTTTGCAGGCTCATGCCTAGATGCTACGATTGGCTATATCCAC TAGCTGCTTAGGTAGCCGCC
Downstream 100 bases:
>100_bases AACCGTGTCTCACGTTCTTCAGTCTTCCTAGGGGTTGGGGGTGAGGGCTATAGCCGAATTAGGCCATAGGTAAGGGCATA GCGAACCAGCTCGGTGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR
Sequences:
>Translated_547_residues MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR >Mature_547_residues MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFSTQPEESFRTHPDLLAQWESWT AEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEPVPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQ GVTLYVQTNGEPGERWVTAEFGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARGELIQRLPGNALAVLTTQQIA QRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLLAWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANA ALTQLDRLAQESGVGVTEAGGQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVTVPPKPQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60077; Mature: 60077
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFST CEEEHHHCCCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECC QPEESFRTHPDLLAQWESWTAEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEP CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC VPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQGVTLYVQTNGEPGERWVTAE CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCCCCCEEEEEE FGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHC DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARG CHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH ELIQRLPGNALAVLTTQQIAQRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLL HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH AWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANAALTQLDRLAQESGVGVTEAG HHCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC GQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP CEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVT CCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE VPPKPQR CCCCCCC >Mature Secondary Structure MQVQLHSRLRPLSLTLMAVGSSWLLGSCQLRGPQVQLTGDVLPETALVPQSAPLVLTFST CEEEHHHCCCCCEEEEEEECCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEECC QPEESFRTHPDLLAQWESWTAEALAETGKEFSREEMQAWAGEQFTMAVVIPNLVPGAAEP CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC VPGILFGASTRNADLSGQFLAQVRQQAAAEGANFEQRQEQGVTLYVQTNGEPGERWVTAE CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCEEEEEEECCCCCCEEEEEE FGNRFVAVANDPRVMQQAIAVYRGEAEPIGRSESFRTAVGDLYKSGTLAFAYFNFQALQE CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHC DPESFKDWMQDLDPATLGSLQPLRSLAMAAHWQEQGLRLRMLTQTDPKTQVQGGWQPARG CHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH ELIQRLPGNALAVLTTQQIAQRWQAVMPELEKDPPVKESLEELRAEFRANTRLDLEKDLL HHHHHCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH AWMDGEMALLVAPDAQAHPLLQGMGAALVIETSQKDKANAALTQLDRLAQESGVGVTEAG HHCCCCEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC GQVTWADPLFNRPLLTRAWEGNYLIVTSSTAALQTLAQRQGNLLPQTEPLKTLYDQLPKP CEEEECCHHHCCCCEEEECCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC NYGYFLLNWQGIRTVLEATLPGGLAGLEPEARELLTRIDGLGITSYPAGDHAFGLELLVT CCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE VPPKPQR CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA