Click here to switch to the map view.

The map label for this gene is rnhA [H]

Identifier: 86608814

GI number: 86608814

Start: 1405600

End: 1406109

Strand: Direct

Name: rnhA [H]

Synonym: CYB_1340

Alternate gene names: 86608814

Gene position: 1405600-1406109 (Clockwise)

Preceding gene: 86608813

Following gene: 86608816

Centisome position: 46.14

GC content: 61.96

Gene sequence:

>510_bases
ATGCGCAGCCGCAAAGGAGCGCGCCCCAGCCGTCTGGCTGCCTGCCCCCGCAGCGGCATCTTCACGGACGGGGGATGTTC
TCCCAATCCGGGGCCAGGGGGATGGGCCGTGGTGGTGGTTCAAGATGATCGGGTTGTGGAAGAGTTTTGGGGAGGGGATC
CCGATAGCACCAGCAACCGCATGGAGTTGACCGGCCTCATCCGGGCTTTGCGGTATTGCCGCCACACCCAGGGCAACGGC
GTCGATACCATCTACAGCGACTCCCACCTTTGCGTGCAGACTTACAACAATTGGATGGAGCGCTGGGCAGCCCAGGGATG
GCGGCGGCGCACAGGGCCAGTGGAAAACTTGGATCTGGTTGAGGAGTTATATCAACTCAAGCAGGAGTGCCCTCAGGTGC
GGGTGGTCTGGATCCCAGCCCACCAAGGTCTGCGCTGGAACGAGTACGTGGATGGGTTGGTTGCCCAGGCTCGAGCCAGA
GTGACCGTTCCTCCAGAAGTTAGGGGTTGA

Upstream 100 bases:

>100_bases
TGGCACGCCCTTGTGCGGTAAGATGCAGTGTCTGTTGTCGAGCCGGGATCCCAAATGTTGCCGTTAGCGCCGGATGAGCA
CCATGGCCAAGGTTTCACGG

Downstream 100 bases:

>100_bases
GGTTCCACACCGGCAGTGGGGGCACTGTGAAACTGGTTAGCAGCAAGATGCTTGCCAAGACTACAAGGCTGTTAGGCTTG
GCTTGACTGCAAGGTGCAGA

Product: ribonuclease H

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MRSRKGARPSRLAACPRSGIFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGNG
VDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLVEELYQLKQECPQVRVVWIPAHQGLRWNEYVDGLVAQARAR
VTVPPEVRG

Sequences:

>Translated_169_residues
MRSRKGARPSRLAACPRSGIFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGNG
VDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLVEELYQLKQECPQVRVVWIPAHQGLRWNEYVDGLVAQARAR
VTVPPEVRG
>Mature_169_residues
MRSRKGARPSRLAACPRSGIFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGNG
VDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLVEELYQLKQECPQVRVVWIPAHQGLRWNEYVDGLVAQARAR
VTVPPEVRG

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

Organism=Escherichia coli, GI1786408, Length=147, Percent_Identity=34.6938775510204, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022892
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 19063; Mature: 19063

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRKGARPSRLAACPRSGIFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNR
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCH
MELTGLIRALRYCRHTQGNGVDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLV
HHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EELYQLKQECPQVRVVWIPAHQGLRWNEYVDGLVAQARARVTVPPEVRG
HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRSRKGARPSRLAACPRSGIFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNR
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCH
MELTGLIRALRYCRHTQGNGVDTIYSDSHLCVQTYNNWMERWAAQGWRRRTGPVENLDLV
HHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
EELYQLKQECPQVRVVWIPAHQGLRWNEYVDGLVAQARARVTVPPEVRG
HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA