Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 86608684

GI number: 86608684

Start: 1253989

End: 1255434

Strand: Direct

Name: cydA [H]

Synonym: CYB_1208

Alternate gene names: 86608684

Gene position: 1253989-1255434 (Clockwise)

Preceding gene: 86608680

Following gene: 86608685

Centisome position: 41.16

GC content: 57.05

Gene sequence:

>1446_bases
TTGGTACAAATCATGTTTCTAGATACCGTTGCCCTTTCTCGTCTACAGTTTGCCCTCACGGCCATTTTTCACATGTTGTG
GCCGGTCTTAACAACAGGAATGGCCATTTATCTTGTTGTGATTGAGGGGCTTTGGCTGAAAACCCGCAACTTAGATTACT
ACCGCCACGCCCGTTTCTGGTCAAAACTCTATGTGTTGAACTTCGGTATTGGCGTGGCCTCAGGCTTGCCAATGGCTTTT
CAGTTTGGCATGAACTGGGCACCTTTTTCCGAAGCAGTGGGGGACTTCTTTGGAACCATCCTGGGCTTTGAGGGCACGAT
GGCCTTTATGCTGGAGGCCAGCTTTCTGGGGATCATGCTGTTCGGCTGGGAGCGCGTCCCGCCGGTGATTCACTGGATCT
CGACGATCCTGGTGGCCTTTGGCGCCAACTTATCCACCTTTTGGATCCTGACGGCCAACTCTTGGCTGCAGACGCCGGCA
GGTGGCGTGTTCGTCGATGGGAAATTTGTGGTGCGGGACTACCTGCAAGCTATTGTCAACCCCTTCATGGTCAACAGCTT
TCTGCACATGTTTTTTGCCACCTTGGAAACCTCTTTGTTTGTTATCGGTGGCATCAGTGCCTGGTACATTCTCAAGCGGC
GGCACAGCGAGTTCTTCTCCCGCTCCCTCAAAGTGGTCTTGGCGATGGCCCTGGTGGTTGCCCCCCTGCAGGTGTATATC
GGCCATTTGAGCGCAGAGCAAGTGTATCGCTATCAGCCGGCCAAGCTGGCGGCCATGGAGGCCCAGTGGGAGACGATCCC
CGCCGGTGAGCGGGCGGACTGGAGCCTGTTGGCTGTGCCCAACGACCGCGAAGAGCGCAACGAGTGGGAGGTGAAGATCC
CTGGCGCGCTGGGCTATCTGCTGGAGTTCAAACCCAGGCTGGATCGACCCATTCAAGGGCTCAAAAGCTGGGATCCCCAA
AATCGTCCCCACATGGTTGGCCTCATCTACTACTCCTTTAGGACAATGGTGGCCATTGGCCTCCTCCTAGCCGGGCTTGT
CGGAGTTACCCTTGTGCAATGGCTGAGGGGCAAGCTCTCAGTGGAGGCCCTTTCTCAGCAAAAGTGGCTGATGAGAGCTT
GGATCTTCGCAGCACCCCTGGGATACATCGCCGTTGAAACCGGTTGGATCGTCCGCTGTGTGGGTCGGCAGCCCTGGATT
GTGTATGGACAACTGCGCACGGTGGAATCGGTTTCGCCCCTGCCGGCAGGAGAAGTGCTGTTTTCTCTGGTTGGCCTGAC
CGCGTTGTACACTGTGTTCTTCGTTGCCGCTCTCTACTTTGGCAGCCGCATCATCCGCAAAGGGCCCAACCTGGAGTTGC
CCGCTCCTGCCCCGGCAACGCAGCCGGTGATCGTGGTCGAGCCTGCCCGCCACGAGCCAGATCGCCGTCCTGCAGAAGCT
CGGTAG

Upstream 100 bases:

>100_bases
TGTCTGCTAGGGAGCAAGATGTTTTTCATGCAAGAGGTGTAGCTGCATCAACTGCAGAGGATGTTGTCGGAAAAAGCTGT
ATTGGCCAATTCATCTAAGC

Downstream 100 bases:

>100_bases
CAGCAGTTTGGTAGCCATCTAACTGGTGACTCCAAGTAGCAACAGGGCAACGTAGCAGGCCCATTCCCCACAGCAGTGAA
ACCCTTCGCTACGTCAACTC

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MVQIMFLDTVALSRLQFALTAIFHMLWPVLTTGMAIYLVVIEGLWLKTRNLDYYRHARFWSKLYVLNFGIGVASGLPMAF
QFGMNWAPFSEAVGDFFGTILGFEGTMAFMLEASFLGIMLFGWERVPPVIHWISTILVAFGANLSTFWILTANSWLQTPA
GGVFVDGKFVVRDYLQAIVNPFMVNSFLHMFFATLETSLFVIGGISAWYILKRRHSEFFSRSLKVVLAMALVVAPLQVYI
GHLSAEQVYRYQPAKLAAMEAQWETIPAGERADWSLLAVPNDREERNEWEVKIPGALGYLLEFKPRLDRPIQGLKSWDPQ
NRPHMVGLIYYSFRTMVAIGLLLAGLVGVTLVQWLRGKLSVEALSQQKWLMRAWIFAAPLGYIAVETGWIVRCVGRQPWI
VYGQLRTVESVSPLPAGEVLFSLVGLTALYTVFFVAALYFGSRIIRKGPNLELPAPAPATQPVIVVEPARHEPDRRPAEA
R

Sequences:

>Translated_481_residues
MVQIMFLDTVALSRLQFALTAIFHMLWPVLTTGMAIYLVVIEGLWLKTRNLDYYRHARFWSKLYVLNFGIGVASGLPMAF
QFGMNWAPFSEAVGDFFGTILGFEGTMAFMLEASFLGIMLFGWERVPPVIHWISTILVAFGANLSTFWILTANSWLQTPA
GGVFVDGKFVVRDYLQAIVNPFMVNSFLHMFFATLETSLFVIGGISAWYILKRRHSEFFSRSLKVVLAMALVVAPLQVYI
GHLSAEQVYRYQPAKLAAMEAQWETIPAGERADWSLLAVPNDREERNEWEVKIPGALGYLLEFKPRLDRPIQGLKSWDPQ
NRPHMVGLIYYSFRTMVAIGLLLAGLVGVTLVQWLRGKLSVEALSQQKWLMRAWIFAAPLGYIAVETGWIVRCVGRQPWI
VYGQLRTVESVSPLPAGEVLFSLVGLTALYTVFFVAALYFGSRIIRKGPNLELPAPAPATQPVIVVEPARHEPDRRPAEA
R
>Mature_481_residues
MVQIMFLDTVALSRLQFALTAIFHMLWPVLTTGMAIYLVVIEGLWLKTRNLDYYRHARFWSKLYVLNFGIGVASGLPMAF
QFGMNWAPFSEAVGDFFGTILGFEGTMAFMLEASFLGIMLFGWERVPPVIHWISTILVAFGANLSTFWILTANSWLQTPA
GGVFVDGKFVVRDYLQAIVNPFMVNSFLHMFFATLETSLFVIGGISAWYILKRRHSEFFSRSLKVVLAMALVVAPLQVYI
GHLSAEQVYRYQPAKLAAMEAQWETIPAGERADWSLLAVPNDREERNEWEVKIPGALGYLLEFKPRLDRPIQGLKSWDPQ
NRPHMVGLIYYSFRTMVAIGLLLAGLVGVTLVQWLRGKLSVEALSQQKWLMRAWIFAAPLGYIAVETGWIVRCVGRQPWI
VYGQLRTVESVSPLPAGEVLFSLVGLTALYTVFFVAALYFGSRIIRKGPNLELPAPAPATQPVIVVEPARHEPDRRPAEA
R

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=512, Percent_Identity=35.7421875, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI87081779, Length=529, Percent_Identity=32.8922495274102, Blast_Score=233, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 54217; Mature: 54217

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQIMFLDTVALSRLQFALTAIFHMLWPVLTTGMAIYLVVIEGLWLKTRNLDYYRHARFW
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCHHHHHHHH
SKLYVLNFGIGVASGLPMAFQFGMNWAPFSEAVGDFFGTILGFEGTMAFMLEASFLGIML
HHHHHEEECCHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FGWERVPPVIHWISTILVAFGANLSTFWILTANSWLQTPAGGVFVDGKFVVRDYLQAIVN
HCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCCCEEECCHHHHHHHHHHHHH
PFMVNSFLHMFFATLETSLFVIGGISAWYILKRRHSEFFSRSLKVVLAMALVVAPLQVYI
HHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GHLSAEQVYRYQPAKLAAMEAQWETIPAGERADWSLLAVPNDREERNEWEVKIPGALGYL
HHCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHH
LEFKPRLDRPIQGLKSWDPQNRPHMVGLIYYSFRTMVAIGLLLAGLVGVTLVQWLRGKLS
HHCCCCCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEALSQQKWLMRAWIFAAPLGYIAVETGWIVRCVGRQPWIVYGQLRTVESVSPLPAGEVL
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEEEEEHHHCCCCCCHHHHH
FSLVGLTALYTVFFVAALYFGSRIIRKGPNLELPAPAPATQPVIVVEPARHEPDRRPAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
R
C
>Mature Secondary Structure
MVQIMFLDTVALSRLQFALTAIFHMLWPVLTTGMAIYLVVIEGLWLKTRNLDYYRHARFW
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEECCCCHHHHHHHH
SKLYVLNFGIGVASGLPMAFQFGMNWAPFSEAVGDFFGTILGFEGTMAFMLEASFLGIML
HHHHHEEECCHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
FGWERVPPVIHWISTILVAFGANLSTFWILTANSWLQTPAGGVFVDGKFVVRDYLQAIVN
HCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCCCEEECCHHHHHHHHHHHHH
PFMVNSFLHMFFATLETSLFVIGGISAWYILKRRHSEFFSRSLKVVLAMALVVAPLQVYI
HHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GHLSAEQVYRYQPAKLAAMEAQWETIPAGERADWSLLAVPNDREERNEWEVKIPGALGYL
HHCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHH
LEFKPRLDRPIQGLKSWDPQNRPHMVGLIYYSFRTMVAIGLLLAGLVGVTLVQWLRGKLS
HHCCCCCCCHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEALSQQKWLMRAWIFAAPLGYIAVETGWIVRCVGRQPWIVYGQLRTVESVSPLPAGEVL
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCEEEEEEEEHHHCCCCCCHHHHH
FSLVGLTALYTVFFVAALYFGSRIIRKGPNLELPAPAPATQPVIVVEPARHEPDRRPAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]