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The map label for this gene is cydB [H]

Identifier: 86608685

GI number: 86608685

Start: 1255628

End: 1256677

Strand: Direct

Name: cydB [H]

Synonym: CYB_1209

Alternate gene names: 86608685

Gene position: 1255628-1256677 (Clockwise)

Preceding gene: 86608684

Following gene: 86608691

Centisome position: 41.21

GC content: 54.48

Gene sequence:

>1050_bases
ATGGAATCTTTTGAGCCTTTACAGCGGTTTCTGCCCCAGGTTTGGTTTTTTATCCTGGGCCTATTCCTATTTCTCTACGT
TCTGCTGGACGGGTTTGATCTGGGAGTTGGTATCCTCTCCCTGACGGCCTCCAGCGAGACGCGGCGCAGCATTCTCATGA
CCAGCTTGGGCAATGTTTGGGATGCCAACGAGACGTGGCTGGTGTTGATGGGGGGATCCCTATTTGGATCTTTTCCTCTC
GCCTACGCCACCATTCTCAATGCCCTCTACATACCCTTGGTGATCATGGTGGTGGGCCTGATCTTGCGGGCCGTTTCCTT
CGAGTTTCGGGAAAACGCCGACAACAAGTTGGTGTGGAACCTAGCCTTTGGAGTGGGCAGCTTTTTGGCAGCCTTGGGCC
AGGGATTTGCCTTGGGCAGCGTCTTCGAAGGGATCCGCGTGGACGAAGCCGGCCACTTTGCCGGCAGCCCCTGGGATTGG
CTGACCTGGCGCACGCTGTTGGTGGCTCTTACTTTGATCCAGGGCTATGTGTTAATCGGCTCAGCCTACCTAATCGTTAA
GACCACCGGCGAGCTTCAGGAAACCTACTACAAGACGGCAACCATCGCCACCTGGACAACTTTACTGGGGGCAGTGTTTA
TCACCATCAGCACTCCTATCATGTCCGAGCAGGCGCGTGCTCAGCTTTTCTCGCCCCCCCTTTTCTACATCTTTGCTGCC
ATCCCAGTTCTGGGACTTTTGTTGGTGGCGTTGTTGCTGCGCAGCCTGCGCCGGCGGGAAGAAAATAGCGTTTTGGTTTA
CACTTTTTTGATCTTTGCGCTTTCTTTTATCGGCTTGGGGTTCATGGTCTTCCCCAACATCATCCCCCCCAGCGTCACCA
TCTACGAAGCGGCAGCCTCCCCCAGCTCGCTGGTGTTTATGCTCACCTTTATTGGCTTTCTGATCCCGGTTATCTTGTCC
TACAACATCTACAACTACGTGGTGTTCCGGGGCAAGATCGTGGTGCAGGAAGTGGCGGCGGAAGAGGCCAAAGTTCCAGA
GGCAGTTTAA

Upstream 100 bases:

>100_bases
TCAACTCCCAACTTCCCTTCCCTGGAGGGAGAGGGACTGGGGATCGCCATCGGGAACTGTCTCGCACTGGTCAGAAATAC
TCAAAGCAGAGGGAACAGCG

Downstream 100 bases:

>100_bases
GCTGGCCTGAGGATGCAGCAATAACCCCGCCCGGTGATGGGCGGGGCAATTTTTTAGGTGCAATCGAACGTCTACAGAGA
AAGGCTGATACATTTACGCT

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MESFEPLQRFLPQVWFFILGLFLFLYVLLDGFDLGVGILSLTASSETRRSILMTSLGNVWDANETWLVLMGGSLFGSFPL
AYATILNALYIPLVIMVVGLILRAVSFEFRENADNKLVWNLAFGVGSFLAALGQGFALGSVFEGIRVDEAGHFAGSPWDW
LTWRTLLVALTLIQGYVLIGSAYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFYIFAA
IPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPPSVTIYEAAASPSSLVFMLTFIGFLIPVILS
YNIYNYVVFRGKIVVQEVAAEEAKVPEAV

Sequences:

>Translated_349_residues
MESFEPLQRFLPQVWFFILGLFLFLYVLLDGFDLGVGILSLTASSETRRSILMTSLGNVWDANETWLVLMGGSLFGSFPL
AYATILNALYIPLVIMVVGLILRAVSFEFRENADNKLVWNLAFGVGSFLAALGQGFALGSVFEGIRVDEAGHFAGSPWDW
LTWRTLLVALTLIQGYVLIGSAYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFYIFAA
IPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPPSVTIYEAAASPSSLVFMLTFIGFLIPVILS
YNIYNYVVFRGKIVVQEVAAEEAKVPEAV
>Mature_349_residues
MESFEPLQRFLPQVWFFILGLFLFLYVLLDGFDLGVGILSLTASSETRRSILMTSLGNVWDANETWLVLMGGSLFGSFPL
AYATILNALYIPLVIMVVGLILRAVSFEFRENADNKLVWNLAFGVGSFLAALGQGFALGSVFEGIRVDEAGHFAGSPWDW
LTWRTLLVALTLIQGYVLIGSAYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFYIFAA
IPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPPSVTIYEAAASPSSLVFMLTFIGFLIPVILS
YNIYNYVVFRGKIVVQEVAAEEAKVPEAV

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=362, Percent_Identity=27.3480662983425, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787213, Length=376, Percent_Identity=25, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38613; Mature: 38613

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESFEPLQRFLPQVWFFILGLFLFLYVLLDGFDLGVGILSLTASSETRRSILMTSLGNVW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCHHHHHHHHHHCCCCC
DANETWLVLMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADNKLVWN
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LAFGVGSFLAALGQGFALGSVFEGIRVDEAGHFAGSPWDWLTWRTLLVALTLIQGYVLIG
HHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
SAYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFYIFAA
CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
IPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPPSVTIYEAAAS
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
PSSLVFMLTFIGFLIPVILSYNIYNYVVFRGKIVVQEVAAEEAKVPEAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MESFEPLQRFLPQVWFFILGLFLFLYVLLDGFDLGVGILSLTASSETRRSILMTSLGNVW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEECCCHHHHHHHHHHCCCCC
DANETWLVLMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADNKLVWN
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LAFGVGSFLAALGQGFALGSVFEGIRVDEAGHFAGSPWDWLTWRTLLVALTLIQGYVLIG
HHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
SAYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFYIFAA
CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
IPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGLGFMVFPNIIPPSVTIYEAAAS
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
PSSLVFMLTFIGFLIPVILSYNIYNYVVFRGKIVVQEVAAEEAKVPEAV
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]