| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608680
Identifier: 86608680
GI number: 86608680
Start: 1247663
End: 1248196
Strand: Direct
Name: 86608680
Synonym: CYB_1204
Alternate gene names: NA
Gene position: 1247663-1248196 (Clockwise)
Preceding gene: 86608677
Following gene: 86608684
Centisome position: 40.95
GC content: 57.49
Gene sequence:
>534_bases ATGAGTTCTCGCTACCTGCTGCCCCCCGCTGAACCCAAGTCTGTCGGTACTGCCTATATCCTCTGGGCGTTGGGCATCTT CGGGATCTGTGGCGTCCATCGCTTCTACCTGGGCAAGACTGGAACAGGCATCCTCTGGCTGTTCACCTTTGGCCTGCTGG GCTTTGGCCAGTTAATTGACCTGTTTTTGATCCCAGGCATGGTGGAGAACTACAACTTCAAGCTGGCCGTCCTGCAGGGA TCCCGACCCTCCCCATCCCCAGCTTCCTCAAAAAACACCTCAGCACCTCCTCAGCCCCTCAAAGGTCAAGCTCTGATGCG GGAGATCCTGCGGCTAGCCCAACAGCGGCAAGGGATCCTCACCCTTGCGGAGATAGCTATCGACTTACCTGCCGACTTTG ACGAAATTGAAAAGGCGCTGCAAGAGCTGAGCCGGCGGAGCATGGCTTTCCCCGAAAACAACCCGGTCACTGGAGCGGTA GAATACCACTTCCCTCACCTGCTGCACCGCTCCCCCAACCAACGTTCGCTCTAG
Upstream 100 bases:
>100_bases CCAGCTTGCTTGCAGAGATCACGCCGGTTCTCTTCTGCCCGTCCAGGCCAGGAGATGACAAACTGGAAGTACCCGCTCGG AGTTATCTCGTCAAATCCCC
Downstream 100 bases:
>100_bases ATGCCCTCCTGCAGACCTCTACTGGGATCCCAGGATCCCTCGGCGCTTGGCTGCCCGAACCGCCCGGCGAAAGGTCAGCA AGCCCAGGCCGAAGTAGAAA
Product: TM2 domain-containing protein
Products: NA
Alternate protein names: TM2 Domain Family; TM2 Domain Containing Protein
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MSSRYLLPPAEPKSVGTAYILWALGIFGICGVHRFYLGKTGTGILWLFTFGLLGFGQLIDLFLIPGMVENYNFKLAVLQG SRPSPSPASSKNTSAPPQPLKGQALMREILRLAQQRQGILTLAEIAIDLPADFDEIEKALQELSRRSMAFPENNPVTGAV EYHFPHLLHRSPNQRSL
Sequences:
>Translated_177_residues MSSRYLLPPAEPKSVGTAYILWALGIFGICGVHRFYLGKTGTGILWLFTFGLLGFGQLIDLFLIPGMVENYNFKLAVLQG SRPSPSPASSKNTSAPPQPLKGQALMREILRLAQQRQGILTLAEIAIDLPADFDEIEKALQELSRRSMAFPENNPVTGAV EYHFPHLLHRSPNQRSL >Mature_176_residues SSRYLLPPAEPKSVGTAYILWALGIFGICGVHRFYLGKTGTGILWLFTFGLLGFGQLIDLFLIPGMVENYNFKLAVLQGS RPSPSPASSKNTSAPPQPLKGQALMREILRLAQQRQGILTLAEIAIDLPADFDEIEKALQELSRRSMAFPENNPVTGAVE YHFPHLLHRSPNQRSL
Specific function: Unknown
COG id: COG2314
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19575; Mature: 19444
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRYLLPPAEPKSVGTAYILWALGIFGICGVHRFYLGKTGTGILWLFTFGLLGFGQLID CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LFLIPGMVENYNFKLAVLQGSRPSPSPASSKNTSAPPQPLKGQALMREILRLAQQRQGIL HHHCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH TLAEIAIDLPADFDEIEKALQELSRRSMAFPENNPVTGAVEYHFPHLLHRSPNQRSL HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCCCCC >Mature Secondary Structure SSRYLLPPAEPKSVGTAYILWALGIFGICGVHRFYLGKTGTGILWLFTFGLLGFGQLID CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH LFLIPGMVENYNFKLAVLQGSRPSPSPASSKNTSAPPQPLKGQALMREILRLAQQRQGIL HHHCCCHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCH TLAEIAIDLPADFDEIEKALQELSRRSMAFPENNPVTGAVEYHFPHLLHRSPNQRSL HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA