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The map label for this gene is ydcM [C]

Identifier: 86608677

GI number: 86608677

Start: 1244786

End: 1246021

Strand: Direct

Name: ydcM [C]

Synonym: CYB_1201

Alternate gene names: 86608677

Gene position: 1244786-1246021 (Clockwise)

Preceding gene: 86608676

Following gene: 86608680

Centisome position: 40.86

GC content: 56.47

Gene sequence:

>1236_bases
ATGACCCAAGTCCTGACCGTATCCTGCAAGCTCAAGGTGTCCCAGTCGCAGGCCGCCAAATTGGACGCGACTTTGGAGGC
TTTTGGCCAAGCCTTGAACTGGGTCAACCAAAACACACCCGAGAAAGTCGCCAACGCCGTTAAGCTCCAGTCTCTGTGCT
ACCGCGAAATCCGTGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAACAGATATGCAGACGGGTAGCGTATGCTCGCAAG
GTGGCACAACAGAAAAACCGCCCCGTCAAAGCGTTGTCGCTACGCGACGCTAACGCGAACAAGGGGGGCTTCGCTACCTA
CGACGCTCGTATCTTTTCGTTCCGCGAGAAAGACTGGTCGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGC
TGGCGATTGGCCGCTACCAGAGAGAACGGCTGGCGGGCTCCAATCCCAAATCTGCCACTCTGGTCAAGCGTAAAGACGGC
TCCTACTCCATTCAAATCTGTGTAGAAGCGGAGCCATCCCCACCGCAACGCACGGGTAGAGTACTGGGGGTGGACTTGGG
GAGGACGGATATTGCCCATACGTCAGAGGGGGACAATTGGAATGGACAGCAGTTGAACAGAGTCCGCGACCACTACTCCC
GGTTGAGGGCGGTACTCCAACGCAAAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGG
CTGTCTGGCAAGGAGAGACGTTTTCAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAAGCTAC
CAACAGCGCTATTGCCCTGGAAGACCTGACAGGGATCCGGAAAAGAGTCAATCAACAGCCGCGCAGCAAAGCCGAGCGGC
GCAGGGCCAACAGTTGGGCGTTCTACCAACTACGTCAGTTTCTGGAATACAAGGCGAGGGCTGCAGGGGTTTCTCTGATT
CTTGTGCCGCCTGCTTACACGTCGCAGACCTGTCACAAGTGTTTACACATCCATCCCGACCCTGCGCAATCCTACCGCAG
TGGAAAGAAGTTTAAGTGTGGGCACTGTGGATGGGAAGGAGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTTG
GGGCTGTCGTAAACCAGCCTAGAGGTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAACAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTTAGCGGTCGGAGTCGGGTAG

Upstream 100 bases:

>100_bases
CTGCAGGCTATTTTCTAGCGCTTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGCCGAGAGGAA
TGCGAGGTTACAATAGAACT

Downstream 100 bases:

>100_bases
TTTACATTCCCCTCTCCGATCCGGCTGATCAGCGACCCCCAAGCCGCAGTGCCGGAAGCAACCTCTAGCCCGGTTCAAAC
GGCTGCCCCAGAGCTGCCGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTQVLTVSCKLKVSQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQICRRVAYARK
VAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWSVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLI
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALFGAVVNQPRGSGLFCSLVEQNRLRATES
PLRTALAVGVG

Sequences:

>Translated_411_residues
MTQVLTVSCKLKVSQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQICRRVAYARK
VAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWSVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDG
SYSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLI
LVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALFGAVVNQPRGSGLFCSLVEQNRLRATES
PLRTALAVGVG
>Mature_410_residues
TQVLTVSCKLKVSQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRARFGLSSNLAQQICRRVAYARKV
AQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWSVSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGS
YSIQICVEAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQRL
SGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWAFYQLRQFLEYKARAAGVSLIL
VPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEGDADLNGANVIALFGAVVNQPRGSGLFCSLVEQNRLRATESP
LRTALAVGVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46005; Mature: 45874

Theoretical pI: Translated: 11.23; Mature: 11.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVSCKLKVSQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQICRRVAYARKVAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEHHHHEEEECCCCE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARAAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALFGAVVNQPRGSGLFCSLVEQNRLRATESPLRTALAVGVG
CCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLTVSCKLKVSQSQAAKLDATLEAFGQALNWVNQNTPEKVANAVKLQSLCYREIRAR
CCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQICRRVAYARKVAQQKNRPVKALSLRDANANKGGFATYDARIFSFREKDWS
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEHHHHEEEECCCCE
VSLTTVEGRERFELAIGRYQRERLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGR
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCC
VLGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAVLQRKASKGTRSSRRRCRQLLQR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LSGKERRFQAWVNHRISKAIVSRAKATNSAIALEDLTGIRKRVNQQPRSKAERRRANSWA
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHCCCHH
FYQLRQFLEYKARAAGVSLILVPPAYTSQTCHKCLHIHPDPAQSYRSGKKFKCGHCGWEG
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHCCCCCEECCCCCCCC
DADLNGANVIALFGAVVNQPRGSGLFCSLVEQNRLRATESPLRTALAVGVG
CCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]