Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608142

Identifier: 86608142

GI number: 86608142

Start: 669015

End: 669383

Strand: Reverse

Name: 86608142

Synonym: CYB_0654

Alternate gene names: NA

Gene position: 669383-669015 (Counterclockwise)

Preceding gene: 86608143

Following gene: 86608141

Centisome position: 21.97

GC content: 53.93

Gene sequence:

>369_bases
ATGGCGGAGCAACATAAGCCTCTGAAGAGCCTGGAAAATCAAATGGAACGGGCTGTTCTGGAGATGGTCAATGAAATCCT
GCTGATGGAGAGTCAACAGCGCTACTGCTTCTGCGAGAAATTCTGTAACGATGCTGCCGCCCTGGCTTTGAACAACCTCC
AGCCTCGATACGCCACCAGTTTTCACGGCTCTCTCCGAACTTTAGAAGCCATTCAAGCGGATCAGGAGTTGCAGAGGCTG
ATCCGGTTGGAGGTGGTGAAGGCCATGGACAAGGTGGCGGCCAATCCCCGTTGCCCAGAACCTGAATGTCCTTTGCTGCT
GCGCGACGTCGAGGCGATAGAGTTAGAACTGGCCCCTAGCGACAATTGA

Upstream 100 bases:

>100_bases
GTCAACAGAGAGTAGAGCAGCATCGAAGGTAATCGAGGGCACTCCTGATCACTGAAAACAGTGACTTGGCGGCGGATTCG
GTTCCCATTGGGAGGTAGCG

Downstream 100 bases:

>100_bases
AGGAATGGCTCTGATGGAGCTGCGCTCCGCTAGCGCGAACGTTTCCCCTTCGCCAGTGGCCTTCCTCGGCCCTGCTGGAA
CCTACACAGAGTTAGCAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MAEQHKPLKSLENQMERAVLEMVNEILLMESQQRYCFCEKFCNDAAALALNNLQPRYATSFHGSLRTLEAIQADQELQRL
IRLEVVKAMDKVAANPRCPEPECPLLLRDVEAIELELAPSDN

Sequences:

>Translated_122_residues
MAEQHKPLKSLENQMERAVLEMVNEILLMESQQRYCFCEKFCNDAAALALNNLQPRYATSFHGSLRTLEAIQADQELQRL
IRLEVVKAMDKVAANPRCPEPECPLLLRDVEAIELELAPSDN
>Mature_121_residues
AEQHKPLKSLENQMERAVLEMVNEILLMESQQRYCFCEKFCNDAAALALNNLQPRYATSFHGSLRTLEAIQADQELQRLI
RLEVVKAMDKVAANPRCPEPECPLLLRDVEAIELELAPSDN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13912; Mature: 13781

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQHKPLKSLENQMERAVLEMVNEILLMESQQRYCFCEKFCNDAAALALNNLQPRYATS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHCCCCHHHHH
FHGSLRTLEAIQADQELQRLIRLEVVKAMDKVAANPRCPEPECPLLLRDVEAIELELAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCC
DN
CC
>Mature Secondary Structure 
AEQHKPLKSLENQMERAVLEMVNEILLMESQQRYCFCEKFCNDAAALALNNLQPRYATS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHCCCCHHHHH
FHGSLRTLEAIQADQELQRLIRLEVVKAMDKVAANPRCPEPECPLLLRDVEAIELELAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEEECCCC
DN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA