| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608122
Identifier: 86608122
GI number: 86608122
Start: 644667
End: 645770
Strand: Reverse
Name: 86608122
Synonym: CYB_0633
Alternate gene names: NA
Gene position: 645770-644667 (Counterclockwise)
Preceding gene: 86608123
Following gene: 86608121
Centisome position: 21.2
GC content: 60.24
Gene sequence:
>1104_bases TTGACCTTTCCGGTGCAGGCACGGGTGCTGCTGCGGGTAGGTATTGCCGTCAACAAGCCCCAGGTCACCGTCGGCAGCTC TACCGGAGCCCGCCTATTGAATGCCCAGGGACAGCCGCTGGCAGAGGTTCAGGCCATGCAACCGCTGCAGGCCAGCCGTT CGGGTTCAGCAGTCAGTTTGGCCGGCCAACAGGGAGAACGTCTTTACCTACAGCCCACCACCTCCGATGGGTTAGTGTTT ATCGACCAGAATTGGTACCGTGGCTTGGTGGAGCTGATCCCTGGCGAGCGTGGGGTGATTGCCATCAACCAAGTTGGCTT GGAGGACTACGTTTCCAGCGTGGTGGGCAGCGAGATGGGACACCGTTTTCCCATGGAGGCTCTTAAAGCCCAAGCCGTGG CCTCCCGCACCTATGCCCTCTACCACCGCAGTCGCCGTTCCCAGCAGCCTTTTGACTTAGGAAACGGGATTGATTGGCAG GTTTACAAGGGAGTGGCTGCCGAATCCAGCCGTACCCAAGCGGCTGCCCGTGAGACCGCCGGGCAGGTTCTCATCTACCA GGGGCAGTTGATCAATGCGGTTTTCCACTCCTCTGCGGGGGGACATACAGATGATGCAGGCAACGTCTGGTTAGAATCGC GGCCCTACTTACAGGGGGTGCCGGATTTCGATCAGCACTCACCGGTGTTTAGCTGGACGGCCACCGTTCCTGCCCAACAG ATTCAGCAATTGGCTGCCGGGATCGGTGCCATTCGTTCTGTGGAGGTACTGCGCAGCTCCCCGTGGGGACGGGCAATCAC GGTGCGCTTGACGGGATCCCAAGGGATCAGAGATCTCAATGCCGGCGATTTTCGTCGGGCTCTTGGGTTGCGCAGCACAA AGATTGCCATTAGCCCGCGCGGGGAGGCCGCCACTACGGCCAGCCTGGCTCCTGTGGCAGGGACATTCCCAGCTTTCTTT GAGATTCATGGGCGGGGCTACGGGCACGGGGTGGGCATGAGCCAGTGGGGAGCTGCCGCCCTGGCCAGCCAAAACTACTC TTACCAACAGATCCTCAGCCACTACTACCGCAACACCAGTCTGGCAGTGGTGGAAGGACGTTAA
Upstream 100 bases:
>100_bases TTTCACAGAGGATTGGTGTGTGACTATTGCCCTCTCCTTTTCTCCTCTCCCATCAGCTTGGCTTAGGAGTATTGCCCTTC TGGTTTGGGCTTGGCTGTGC
Downstream 100 bases:
>100_bases GGCTCAACTTCAAGGAGAAGCCAACAAAATCATCGATTGGTAGCAAAAGTAGCTGCAGTTTTTAAGAGCTTATGAGAAGC AGCATTTTAATTGAACCGGA
Product: SpoIID/LytB domain-containing protein
Products: NA
Alternate protein names: H-34 [H]
Number of amino acids: Translated: 367; Mature: 366
Protein sequence:
>367_residues MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVF IDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQ VYKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFF EIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR
Sequences:
>Translated_367_residues MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVF IDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQ VYKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFF EIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR >Mature_366_residues TFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSLAGQQGERLYLQPTTSDGLVFI DQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMGHRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQV YKGVAAESSRTQAAARETAGQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQI QQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPRGEAATTASLAPVAGTFPAFFE IHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTSLAVVEGR
Specific function: Might be involved in sporulation [H]
COG id: COG2385
COG function: function code D; Sporulation protein and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013486 - InterPro: IPR013693 [H]
Pfam domain/function: PF08486 SpoIID [H]
EC number: NA
Molecular weight: Translated: 39450; Mature: 39319
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSL CCCCHHEEEEEEECEEECCCEEEECCCCCCCEECCCCCCHHHHHHHCCHHHCCCCCEEEE AGQQGERLYLQPTTSDGLVFIDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMG ECCCCCEEEEEECCCCCEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC HRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQVYKGVAAESSRTQAAARETA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCC GQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ CCEEEEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHH IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCC GEAATTASLAPVAGTFPAFFEIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTS CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCHHHHHCCCCCHHHHHHHHHCCCE LAVVEGR EEEEECC >Mature Secondary Structure TFPVQARVLLRVGIAVNKPQVTVGSSTGARLLNAQGQPLAEVQAMQPLQASRSGSAVSL CCCHHEEEEEEECEEECCCEEEECCCCCCCEECCCCCCHHHHHHHCCHHHCCCCCEEEE AGQQGERLYLQPTTSDGLVFIDQNWYRGLVELIPGERGVIAINQVGLEDYVSSVVGSEMG ECCCCCEEEEEECCCCCEEEEECHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC HRFPMEALKAQAVASRTYALYHRSRRSQQPFDLGNGIDWQVYKGVAAESSRTQAAARETA CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHCC GQVLIYQGQLINAVFHSSAGGHTDDAGNVWLESRPYLQGVPDFDQHSPVFSWTATVPAQQ CCEEEEECHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHH IQQLAAGIGAIRSVEVLRSSPWGRAITVRLTGSQGIRDLNAGDFRRALGLRSTKIAISPR HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCEEEEECCC GEAATTASLAPVAGTFPAFFEIHGRGYGHGVGMSQWGAAALASQNYSYQQILSHYYRNTS CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCHHHHHCCCCCHHHHHHHHHCCCE LAVVEGR EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA