Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608047

Identifier: 86608047

GI number: 86608047

Start: 564999

End: 566426

Strand: Reverse

Name: 86608047

Synonym: CYB_0555

Alternate gene names: NA

Gene position: 566426-564999 (Counterclockwise)

Preceding gene: 86608049

Following gene: 86608046

Centisome position: 18.59

GC content: 54.41

Gene sequence:

>1428_bases
TTGGCAAGGAATCCACAGGGCCTTAGGGTGGAGATCAAAAAGGAACCACGACCTCTGGCAGGTGAACTCCGACGACGATT
ACCAAGAAGAAATCAAAGTGCCATCTTCACCCTTAACGATTCAGCGATGAGCTTTCCTCTCAGTCATCTGTTGCAGCGAG
GTCGGCAGTACCTTGCCCCTTTCTTAGGGCAAATCTTGTTGCCCAGCTTGGCCTTGACGGTGCTGCAGATCTTCATGATC
CCGTTCTGGAGTGAGGAGAGCGACTATGCTTCTGCCTTCACAGCCCTGAGTCAGCGGGATAGCTATTGGTATCTCAGCAT
TGTGCGGCGAGGGTACCAGTTTGTGGGCTTTGACAAGATTGCCTACGAGCAGAGCAACGTAGCTTTTTTCCCCGGCTATC
CCCTGGCAGTGGCCGCAATCAGTCACCTTGTGGGAGTTGACCCTGAACTGGGGCTCTACCTCACCGCCCAGCTCTTTTGC
TGGCTGATGTGGGTTTACCTTTTCCTGCTTTACCGCAGGTGGCAAATTCCCCCCCTCTGGCAAATTTTGGCCAGTTTGCT
CATCTTCTTTTATCCCACCAGCTTTTACCTGGTCGTGGGCTACAGCGAATCTTTGTTTATGGCCAGCCTACTGGGTTTTC
TCTACTGGTCAATTCACGGGGGCCGTCCCCTGCTGATGCTCCTGGCTGGGATCCACGGCTTGGTGATGAGTGCTACTCGG
ATTGTCGGCTTGCCGGTGGCGCTGCTCCCTTTTTTGAATCTCCTGAAAGCGGGGGAGAGAACCCAAGCCCGCCGTTGGTT
TTGGACGAGTATGGCAGCGAGCTTGGCTCTGTTGGGTGGCCTGGGCTTTTTTCTCTACTGTCAGCTCCGCTTCGGACGCT
GGGATCTCTACCTGGAAATGCAGCGTTACTTTACCGGCGTGAAAGCCAATTATCAAGCTATTTTCCAAGCTCGCACATAT
GTCCTTTCCGCCGAACGCTGGCAAAGCTTACTCTCTCTTTCTGCACCGATGAAAGACCCTGGGCTGTGGGCTGACGCTCT
TAGCCAACTGTTTGTGTCTGCCACCCTGGGATCCCTGCTTGTTACAGGTTTAATGGATGCGGCAGGAGTTATGGCAGGTA
GAAGCCAGTGTTGGCGGGAGCGGCTGGGATTTCATCTGGCTGCTTGGGCCATGTTTTACATTGCCCTGACGGGTACGAGC
CCCTTGGGCCAGCGAAGCATGAGCCGCTATTGTCTGCCGGTTCACATCCTGCAGGTGTTGGCGTTGGTACATTGGGCCAA
ACACACCGATTTCAGCTTCATCCCCCAAAGGGTGCTTGGCTATCTTGGCACTATCCTGAAGCTGGGCTACGGGCTTCTAG
CTTTGATCTTCCTCGCCCTCAACCAAATCCTCACCTGGCGCTACGTCCACCATCTCTGGGTGGCTTGA

Upstream 100 bases:

>100_bases
GGAAGTTTCTCGACCTGTTTTAGAGCCGTTTTATAATATTTACACTCTCACTCTTAGAGGGTGTCAATTGAACCAAGCGG
TATCTCAAAAGTCCTAGACT

Downstream 100 bases:

>100_bases
CTCCGCTTTCCTGAAGATAGGATGTGAGGGATCCCAACTTCTCACCGGCTGAGAGCTGTGGCCTTCTCTTCTCCCCGCAA
GTCTCCCCGTCAAAACTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMI
PFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFC
WLMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR
IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTY
VLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTS
PLGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA

Sequences:

>Translated_475_residues
MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMI
PFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFC
WLMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR
IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTY
VLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTS
PLGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA
>Mature_474_residues
ARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAPFLGQILLPSLALTVLQIFMIP
FWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKIAYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCW
LMWVYLFLLYRRWQIPPLWQILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATRI
VGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEMQRYFTGVKANYQAIFQARTYV
LSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLLVTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSP
LGQRSMSRYCLPVHILQVLALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54162; Mature: 54030

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAP
CCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHH
FLGQILLPSLALTVLQIFMIPFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKI
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEECCHHH
AYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCWLMWVYLFLLYRRWQIPPLW
HEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEM
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QRYFTGVKANYQAIFQARTYVLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSPLGQRSMSRYCLPVHILQVL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARNPQGLRVEIKKEPRPLAGELRRRLPRRNQSAIFTLNDSAMSFPLSHLLQRGRQYLAP
CCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHCCHHHHHHHHHHHHHH
FLGQILLPSLALTVLQIFMIPFWSEESDYASAFTALSQRDSYWYLSIVRRGYQFVGFDKI
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEECCHHH
AYEQSNVAFFPGYPLAVAAISHLVGVDPELGLYLTAQLFCWLMWVYLFLLYRRWQIPPLW
HEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
QILASLLIFFYPTSFYLVVGYSESLFMASLLGFLYWSIHGGRPLLMLLAGIHGLVMSATR
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IVGLPVALLPFLNLLKAGERTQARRWFWTSMAASLALLGGLGFFLYCQLRFGRWDLYLEM
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QRYFTGVKANYQAIFQARTYVLSAERWQSLLSLSAPMKDPGLWADALSQLFVSATLGSLL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VTGLMDAAGVMAGRSQCWRERLGFHLAAWAMFYIALTGTSPLGQRSMSRYCLPVHILQVL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ALVHWAKHTDFSFIPQRVLGYLGTILKLGYGLLALIFLALNQILTWRYVHHLWVA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA