Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608044

Identifier: 86608044

GI number: 86608044

Start: 562273

End: 562914

Strand: Reverse

Name: 86608044

Synonym: CYB_0552

Alternate gene names: NA

Gene position: 562914-562273 (Counterclockwise)

Preceding gene: 86608045

Following gene: 86608043

Centisome position: 18.48

GC content: 60.59

Gene sequence:

>642_bases
TTGGGGATCGACCTTCGCAGTTACGTGTTTTTGGATCGGCTGCAACCCCAGTATGCTGCTTATCTGGGCACAGTAGCCTA
CGGCTTTTTGCCCCTGCCTGGGGACACTTCTTTGTGGGTCGAGATTTCCCCCGGCATCGAGATCAACCGCGTTATGGATA
TTGCCCTGAAGGCCACCTCGGTGAGGCCGGGGCTGCAGGTGGTGGAACGCCTCTACGGCCTTCTGGAAGTACACTCCAGC
AACCAAGGGGATACCCGCACCGCCGGACGGGCGATTCTGGCTGCCTTGGGGGTGAGCGAACAGGAGCGCCTCAAGCCCCG
CATCATCTCCAGCCAGATCATCCGCAACATCGATCCCCACCAAACCCAGTTGATTAACCGTTCCCGCCGTGGCCAAATGC
TCCTGGCCGGCCAAACCCTCTACATCCTGGAGGTGCAACCGGCAGGCTATGCCCCCCTGGCTGCCAACGAGGCAGAAAAA
TCTGCCCAGATCAACATCCTGGAGGTGATGCCTTTCGGTAGCTTTGGCCGCGTGTACTTGGGAGGGGAAGAGCGAGATAT
TCTGGCCGCCTGCCGCGCTGCCGAAGCCGTCTTGGCGGGGGTTTCCGGTCGGGAGCCCCTCTTGTTGCCTGAGGAGGTGT
AG

Upstream 100 bases:

>100_bases
GCCGGTCTGCCCAAGATCCAAGAGCTGGGATGAGGCTGGAGAATGAGAATGTAGATCGCCATCAGCTCAACATCCAACTG
AGGCCAAAGGGAGGACTTTT

Downstream 100 bases:

>100_bases
CCAATGGCAGACTCCGATCCCAAGCCAAGATCGCCCCTGTCGCAACGCCGGGATCCCTCTTCAGCAGAGCAGGTGAGGCT
GTTGACGGAGCTGGCCGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacterial Microcompartments Protein Family; Microcompartments Protein Family Protein

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSS
NQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEK
SAQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV

Sequences:

>Translated_213_residues
MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSS
NQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEK
SAQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV
>Mature_212_residues
GIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATSVRPGLQVVERLYGLLEVHSSN
QGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPHQTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKS
AQINILEVMPFGSFGRVYLGGEERDILAACRAAEAVLAGVSGREPLLLPEEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23253; Mature: 23122

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATS
CCCCHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEHHHHEEHHEECC
VRPGLQVVERLYGLLEVHSSNQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPH
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH
QTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKSAQINILEVMPFGSFGRVYL
HHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE
GGEERDILAACRAAEAVLAGVSGREPLLLPEEV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GIDLRSYVFLDRLQPQYAAYLGTVAYGFLPLPGDTSLWVEISPGIEINRVMDIALKATS
CCCHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEHHHHEEHHEECC
VRPGLQVVERLYGLLEVHSSNQGDTRTAGRAILAALGVSEQERLKPRIISSQIIRNIDPH
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHH
QTQLINRSRRGQMLLAGQTLYILEVQPAGYAPLAANEAEKSAQINILEVMPFGSFGRVYL
HHHHHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEE
GGEERDILAACRAAEAVLAGVSGREPLLLPEEV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA