Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86607977

Identifier: 86607977

GI number: 86607977

Start: 495354

End: 495920

Strand: Direct

Name: 86607977

Synonym: CYB_0483

Alternate gene names: NA

Gene position: 495354-495920 (Clockwise)

Preceding gene: 86607975

Following gene: 86607985

Centisome position: 16.26

GC content: 57.5

Gene sequence:

>567_bases
ATGTTTGAAAAACTGCCCTTCCCCCTGAGCACTCTCGTGTTGCTGGCCGGCGTTGCCGCCACGGCTTGGGGCTTTGCCCA
CTACAACGATCCCACCCTCAATCTCATTGGCCTGTTTGCCGGGATCCCCTTGCTGTTGGGAGGGGTGACCATGAAGGTAG
TGGAACTCAAGCCGGTACCTGCCCTGGCCGCCCCTTCTCTCGAGGTGATCCAAGCCCGCGCCCAGCAGGCCACGGAAATT
CAAAAGCAAGTCCGCGCCGATATCACCAAATATAGCTACGGGGCTAATGCCCACCTGGAAGATGCCCTGGAGTTTCTGGG
TCTGCGCGGCCCTCTGGAAGCAGATCTGCCCAAGGTGAGAGGGTACAGAGAAGAGCTGCGAGATGGCCGGTATACCTTGG
TGCTTCTGTTCGATTCCCCCAAGGTTCCCTTCCAACAATGGCAGGAAAGCTACCAGAAAAAAATGCAAGGCTTCTTTGGC
CGAGATGTGGAGGTGCAACTGGGGCAGCCCCAAGAAAATCAGGTGGAATTGGCGCTTGTTGCCCGAGGTGGATCCCAGGC
CACTTGA

Upstream 100 bases:

>100_bases
GTGGGCATTTTGTGATTATCCATCCCAATGGAGGCTAAGTCCACCGCTGGCGCTTTTCCTGCTAGCCTGGGTTTTCAGGT
GGCCTTTCTTCCTCTCCTGT

Downstream 100 bases:

>100_bases
AGAAGCCATTAGCTGCTGAGTGCAACTCAACGGATCCCGAAGCTAATGCAGCCAGTAACTCAGGACTGTCGAGAGTTAAC
TCATGAGGGGTGTGGGGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFEKLPFPLSTLVLLAGVAATAWGFAHYNDPTLNLIGLFAGIPLLLGGVTMKVVELKPVPALAAPSLEVIQARAQQATEI
QKQVRADITKYSYGANAHLEDALEFLGLRGPLEADLPKVRGYREELRDGRYTLVLLFDSPKVPFQQWQESYQKKMQGFFG
RDVEVQLGQPQENQVELALVARGGSQAT

Sequences:

>Translated_188_residues
MFEKLPFPLSTLVLLAGVAATAWGFAHYNDPTLNLIGLFAGIPLLLGGVTMKVVELKPVPALAAPSLEVIQARAQQATEI
QKQVRADITKYSYGANAHLEDALEFLGLRGPLEADLPKVRGYREELRDGRYTLVLLFDSPKVPFQQWQESYQKKMQGFFG
RDVEVQLGQPQENQVELALVARGGSQAT
>Mature_188_residues
MFEKLPFPLSTLVLLAGVAATAWGFAHYNDPTLNLIGLFAGIPLLLGGVTMKVVELKPVPALAAPSLEVIQARAQQATEI
QKQVRADITKYSYGANAHLEDALEFLGLRGPLEADLPKVRGYREELRDGRYTLVLLFDSPKVPFQQWQESYQKKMQGFFG
RDVEVQLGQPQENQVELALVARGGSQAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021275 [H]

Pfam domain/function: PF11016 DUF2854 [H]

EC number: NA

Molecular weight: Translated: 20723; Mature: 20723

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKLPFPLSTLVLLAGVAATAWGFAHYNDPTLNLIGLFAGIPLLLGGVTMKVVELKPVP
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
ALAAPSLEVIQARAQQATEIQKQVRADITKYSYGANAHLEDALEFLGLRGPLEADLPKVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHC
GYREELRDGRYTLVLLFDSPKVPFQQWQESYQKKMQGFFGRDVEVQLGQPQENQVELALV
CHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE
ARGGSQAT
ECCCCCCC
>Mature Secondary Structure
MFEKLPFPLSTLVLLAGVAATAWGFAHYNDPTLNLIGLFAGIPLLLGGVTMKVVELKPVP
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
ALAAPSLEVIQARAQQATEIQKQVRADITKYSYGANAHLEDALEFLGLRGPLEADLPKVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHC
GYREELRDGRYTLVLLFDSPKVPFQQWQESYQKKMQGFFGRDVEVQLGQPQENQVELALV
CHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE
ARGGSQAT
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]