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The map label for this gene is yhdT [H]

Identifier: 86607975

GI number: 86607975

Start: 492232

End: 493674

Strand: Direct

Name: yhdT [H]

Synonym: CYB_0481

Alternate gene names: 86607975

Gene position: 492232-493674 (Clockwise)

Preceding gene: 86607974

Following gene: 86607977

Centisome position: 16.16

GC content: 58.42

Gene sequence:

>1443_bases
ATGGACGACCCCCCTTTAGCCTCGGCGGCTACTTTCCCCAACACTGAGCTTTCGTGGGGAGATGCGTCGCTTAGTCTCCT
TTGGGTCATCGGTCTTCTGGTCATCAACGCTTTCTTTGTCGCAGTCGAGTTTTCCTTGGTATCGGCGCGGCGCTCCCGGA
TAGTGCAGTTGGCCAGCGAAGGGAACCGGCAGGCAGCTCTTGTGCAAAAAGCCCAGGAACAACTGGAATATGCCCTCTCC
ACCACCCAGTTGGGCATTACTCTGGCCAGTGTATTGCTGGGCTGGATTGGAGCCACCCAAGTTTCGCCCACGCTGTTTTT
GGCCTTGAGCCGCTTGGACTGGTTTCAGGGTGTGGATCCGGCCCTTATTCGAGGGGTGGCAGTGGTGTTGGTGTTTTCGC
TGCTTACCTACTTGCAGATTGTGGTGGGGGAGCTGATCCCCAAGACTCTGGCCATCCTCTATTCGGAGCCGATTGCGCTC
AAACTGGCCTGGCTCAACCGCTTGGTAAGCCGCTTCTTGCATCCTTTTGTCGAGCTGCTCCGCTTCTCCTCCCGCTGTGT
GCTGCGCATCTTGGGCGTCCGCATCCCCGAGGCCACTTCCTTTTACAGCACCATGACGGTGGAGGAGCTGCAACTGTTGA
TCGCTTCCTCGGTGGAGTCGGGCAACATCGAGGCGGAAGAGCGAGAGCTGTTGAGCAACATCTTCGAGTTTGGCGAGACG
GTGGCCAGCGAGGTGATGATCCCGCGTACCAGCATCGACGCGGTGCCGGAAACTGCAACGGTGCAAGAGGTGCTGGCCGA
GGTGGCCGAATCAGGACACTCCCGTTACCCGGTCTACGGCGAGTCTTTGGATGACATCCGCGGGCTGATCCACGTTAAGG
AGTTGATCGGCCAGTTGGCCAAGGGATCCATCGACCTCCACAGCCCCATCACGCCTTTTATCCGCGAGGCCCACTTTGAG
CCGGAGAACAAGCCGATTGCCGAACTGTTGCCCGAAATGAGGCAGCACCACTGGCCGATGGTGGTGGTGGTGGATGAGTT
TGGCGGCACGGCGGGCCTGATCACCATTCAAGACTTGGTGGAGGAGATTGTCGGCAAGCTCTCCGATGGCCCGGATCCCA
ACACCAAGGAGCCGGACATTCAAGAACTCGACGAAAATACCCTGCTCATTCAGGCTCAGCTAGATATTGAAGAGATCAAC
GAGCGCTGTGGCCTCAACCTGCCTCTGCACGAGGATTACCAAACGCTAGGGGGCTTTTTGATCTACCACATGCAGAAGAT
CCCACGTGCTGGGGAAAAGTTCACCTACCAAGAGATGGAGTTTCAGGTGGTGCGCATGGAGGGGCCACGGGTGGATCGGG
TGAAGGTAGCCCGCCGCCCCGGCACTCCGGCAAACTCCCTACCGCTGCTCCCCCCGGCGCAAACGGCAAAAACCCGTCCA
TAA

Upstream 100 bases:

>100_bases
AGCTGCCTGATGGCTGAAGCCGGTTCGACAGCTGGCTAGGGACAGGTGGCGGGGTCAGGCTGAGCTAGAATGCTGTCTAT
CCGTCTTGCTGCTCCCCCTG

Downstream 100 bases:

>100_bases
ACCTGCTGGAGAGGACTAGGCCGTTGCTTTGACCACCTTCAGGGTTTGTAGGCGCACATCCTCTGGGCCGTTGATAAAGC
CGCCTGCCTCATGCACCAAC

Product: HlyC/CorC (HCC) family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MDDPPLASAATFPNTELSWGDASLSLLWVIGLLVINAFFVAVEFSLVSARRSRIVQLASEGNRQAALVQKAQEQLEYALS
TTQLGITLASVLLGWIGATQVSPTLFLALSRLDWFQGVDPALIRGVAVVLVFSLLTYLQIVVGELIPKTLAILYSEPIAL
KLAWLNRLVSRFLHPFVELLRFSSRCVLRILGVRIPEATSFYSTMTVEELQLLIASSVESGNIEAEERELLSNIFEFGET
VASEVMIPRTSIDAVPETATVQEVLAEVAESGHSRYPVYGESLDDIRGLIHVKELIGQLAKGSIDLHSPITPFIREAHFE
PENKPIAELLPEMRQHHWPMVVVVDEFGGTAGLITIQDLVEEIVGKLSDGPDPNTKEPDIQELDENTLLIQAQLDIEEIN
ERCGLNLPLHEDYQTLGGFLIYHMQKIPRAGEKFTYQEMEFQVVRMEGPRVDRVKVARRPGTPANSLPLLPPAQTAKTRP

Sequences:

>Translated_480_residues
MDDPPLASAATFPNTELSWGDASLSLLWVIGLLVINAFFVAVEFSLVSARRSRIVQLASEGNRQAALVQKAQEQLEYALS
TTQLGITLASVLLGWIGATQVSPTLFLALSRLDWFQGVDPALIRGVAVVLVFSLLTYLQIVVGELIPKTLAILYSEPIAL
KLAWLNRLVSRFLHPFVELLRFSSRCVLRILGVRIPEATSFYSTMTVEELQLLIASSVESGNIEAEERELLSNIFEFGET
VASEVMIPRTSIDAVPETATVQEVLAEVAESGHSRYPVYGESLDDIRGLIHVKELIGQLAKGSIDLHSPITPFIREAHFE
PENKPIAELLPEMRQHHWPMVVVVDEFGGTAGLITIQDLVEEIVGKLSDGPDPNTKEPDIQELDENTLLIQAQLDIEEIN
ERCGLNLPLHEDYQTLGGFLIYHMQKIPRAGEKFTYQEMEFQVVRMEGPRVDRVKVARRPGTPANSLPLLPPAQTAKTRP
>Mature_480_residues
MDDPPLASAATFPNTELSWGDASLSLLWVIGLLVINAFFVAVEFSLVSARRSRIVQLASEGNRQAALVQKAQEQLEYALS
TTQLGITLASVLLGWIGATQVSPTLFLALSRLDWFQGVDPALIRGVAVVLVFSLLTYLQIVVGELIPKTLAILYSEPIAL
KLAWLNRLVSRFLHPFVELLRFSSRCVLRILGVRIPEATSFYSTMTVEELQLLIASSVESGNIEAEERELLSNIFEFGET
VASEVMIPRTSIDAVPETATVQEVLAEVAESGHSRYPVYGESLDDIRGLIHVKELIGQLAKGSIDLHSPITPFIREAHFE
PENKPIAELLPEMRQHHWPMVVVVDEFGGTAGLITIQDLVEEIVGKLSDGPDPNTKEPDIQELDENTLLIQAQLDIEEIN
ERCGLNLPLHEDYQTLGGFLIYHMQKIPRAGEKFTYQEMEFQVVRMEGPRVDRVKVARRPGTPANSLPLLPPAQTAKTRP

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=426, Percent_Identity=35.4460093896714, Blast_Score=240, Evalue=2e-63,
Organism=Escherichia coli, GI1790664, Length=452, Percent_Identity=25.8849557522124, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI145693175, Length=420, Percent_Identity=23.8095238095238, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786879, Length=256, Percent_Identity=29.296875, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI87082033, Length=395, Percent_Identity=26.0759493670886, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=26.0330578512397, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 53212; Mature: 53212

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPPLASAATFPNTELSWGDASLSLLWVIGLLVINAFFVAVEFSLVSARRSRIVQLASE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNRQAALVQKAQEQLEYALSTTQLGITLASVLLGWIGATQVSPTLFLALSRLDWFQGVDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALIRGVAVVLVFSLLTYLQIVVGELIPKTLAILYSEPIALKLAWLNRLVSRFLHPFVELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RFSSRCVLRILGVRIPEATSFYSTMTVEELQLLIASSVESGNIEAEERELLSNIFEFGET
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VASEVMIPRTSIDAVPETATVQEVLAEVAESGHSRYPVYGESLDDIRGLIHVKELIGQLA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KGSIDLHSPITPFIREAHFEPENKPIAELLPEMRQHHWPMVVVVDEFGGTAGLITIQDLV
CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHH
EEIVGKLSDGPDPNTKEPDIQELDENTLLIQAQLDIEEINERCGLNLPLHEDYQTLGGFL
HHHHHHCCCCCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHH
IYHMQKIPRAGEKFTYQEMEFQVVRMEGPRVDRVKVARRPGTPANSLPLLPPAQTAKTRP
HHHHHHCCCCCCCCCHHHHEEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDPPLASAATFPNTELSWGDASLSLLWVIGLLVINAFFVAVEFSLVSARRSRIVQLASE
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GNRQAALVQKAQEQLEYALSTTQLGITLASVLLGWIGATQVSPTLFLALSRLDWFQGVDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCH
ALIRGVAVVLVFSLLTYLQIVVGELIPKTLAILYSEPIALKLAWLNRLVSRFLHPFVELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RFSSRCVLRILGVRIPEATSFYSTMTVEELQLLIASSVESGNIEAEERELLSNIFEFGET
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VASEVMIPRTSIDAVPETATVQEVLAEVAESGHSRYPVYGESLDDIRGLIHVKELIGQLA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KGSIDLHSPITPFIREAHFEPENKPIAELLPEMRQHHWPMVVVVDEFGGTAGLITIQDLV
CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEHHHHH
EEIVGKLSDGPDPNTKEPDIQELDENTLLIQAQLDIEEINERCGLNLPLHEDYQTLGGFL
HHHHHHCCCCCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHH
IYHMQKIPRAGEKFTYQEMEFQVVRMEGPRVDRVKVARRPGTPANSLPLLPPAQTAKTRP
HHHHHHCCCCCCCCCHHHHEEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]