Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86607964

Identifier: 86607964

GI number: 86607964

Start: 478587

End: 480641

Strand: Reverse

Name: 86607964

Synonym: CYB_0470

Alternate gene names: NA

Gene position: 480641-478587 (Counterclockwise)

Preceding gene: 86607969

Following gene: 86607963

Centisome position: 15.78

GC content: 54.01

Gene sequence:

>2055_bases
ATGCAAGACATCAAGGCCAATGCTCCGCGAATTCTCCTCAATTGGCCAACTCCGCCAGACTATATCCCGCCCCCGCAGCT
TTCAGATCGGCAGGTCAGTCTTTGCCCCAAGAGGAGAGCCAAGGGCTTTGGACTAAACTTTGTCAATCTCTCTAAGGAAT
TGGTGGAGTGCCCAGAGGGAGACTATGACCTCTATGACTTTGTGCAGCAGTCTGAGCAAATTACAAATAAGGAGTTTGAC
CTAGTTATTGTTTGGACTTCCAGCTTTGACCAGAGTAATCCCCTAAATACAAGGAAGTTTAAATGCCCCACACTCTTGCT
AGCTGGAGACACCCACCACTGGAAGTTTCCCATCAACCATCTCTTGGCCTACTGGGCTGCTGAAGGGTTTGATTACGTCG
CTACTGCCTATAACTTCCAGCATTTGCACTGGTTTGCCGCAGCAGGCGCTGAGAATCTTGCCTGGTTGCCTCTTATCTCC
ATGCGCACTGTTACCCACGATTGGGTGGAAGATAGAGAAAATCAAGTGGTCTTTATCGGCCAACAGGGATCCCGCCATCC
CAGGCGTTGCCGGCTGGTTCAAGCCATAAAGAATGCAGATTTGCCCATCCTCATCAAAACAGCCAACCGCCAAGAGGCAG
CCAAATGGTTTGCCCATTCTCTGATTTCCTTTAACTGCAGCCAAAATGGGGATCTGAACTTAAGGAACTTGGAAGTGATT
TCCGCGGGGGGCTTTCTGCTTACTGACCAGCTCTCCTTCGCCTCAGGATTGGACGAACTTTTGGCGCCCGGCACCTACTG
CGACACCTACAACTCCGAAGCCCAACTCCTGGAGAAAATCCGCTACTACCTAGACCATCCCCAGGAGGCCATTCAAATTG
CCCGCCGCGCTTATCACACTTTCGACCAACACTGGCATCCCCGCCACCGCATTCAGAACCTGCTGGACTGGGTGTTTGGG
GGAGAGCTGCCGGAGCCCTTTCGTTACTCGCCCCGCTCTGATGTGCGCTACTTTGTCAGCACGGCCAGCTCTGCCTGGAT
AGACACACGACTAGGAATCTACGAGCCCATTCAAGAGCTGCATCGCGTGCAGGAGCGACTGAGGGTATTTGTTGGCCGAG
GCTGTCCTGGGGTGATAGCCGCAGACTTGCTGGACCTGCCGCGGCTGGAGCTGTACGTGGAAGAGGGGTTTGGGGATCCC
TGTGCCCTGCTGCAGCAGAAGGGAGTGCCCGAGCGAATTCACGAGGTGAGGGGGGAGCCGAGCAGTTGGCCCAGCTTTGA
TGCGGTGGTGTGCACGGTGGGAGACTTGCAGCGGCTGGGGCGGCCTGTGAGGGCTAACTTTGCTTTTGTCTTGGCAGAGG
ACCACCAACTTCTTTTGGCCAATGCCAGTAAGTTAATGGAAGCAGTGTTGCCTGGCTTTGACTTTGGCAAACTCAGGTTT
TCGGTAAAGCTCTACCCAGACACCGTTTTTTACGAGAGGACGTATCTTAACTTTCCTGTGTTTCTGTCTAGTCAGGTGCA
GACGGTTATCGACATCGGAGCTGGGGTAGGCCTTGGTAGCGTTTGTTTTCGGGGTTTCTGCCCTGAGGCGGCCATTCATT
GTTTTGAGGTGGATCCCTTGGCCTTGCACCTGCTGCAGCAGAATGCTCTTGGCCTGGGCAACTGCTTTGTGCATTCGGTG
GGGCTGGCGGGGCAGAATAGCTGCAGAACTTGTCGGCTCTGGCCGGAGGATCCTCAAGCGAAGTGGGGAGTGGAGCAGCT
GCTCCCTTTCCGGGAAGCCAGGGCAGCTCTCAAGGAGCTGGGTCTGGAGTTCATCGATGTGCTCAGGGTGGCTACGGGTG
GGGATGAGGTGGAGGTATTGGCTAACCTGCAGCCGCAGCTTAGGGACATCAAGGTGATTTACGTGGAGTTTACCTCTGAG
CAAGACCGCAAGCGGATTGACCAGATGCTGGATCCCTCTCATCTCCTCTGGCAGGAGGAAGTTTCTCAGGGTAACTACGG
GTGCTTATGTTATCTGAATAGATGCATATTCTACGAAAGCAGTGGTAATCTTTAG

Upstream 100 bases:

>100_bases
TATCGTTTTCCAGGGCAACAGAGATCCCTTGTTGTTGTGTCCAATCCTAGTAGCCTGTAGGAGCTAGAAGAACCTGCCGC
TCAACTTGGGGAGTCGAGAA

Downstream 100 bases:

>100_bases
AAGGCAATCTTTAGGAAGCTCTGAGACTGATGAATCCTCGAGTTCTACTAGTTTGGACGACTCCACCTGATTATGTCCCA
CCTCTCACTCTTTCAGAGCG

Product: FkbM family methyltransferase

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; Methyltransferase FkbM

Number of amino acids: Translated: 684; Mature: 684

Protein sequence:

>684_residues
MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD
LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS
MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI
SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG
GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP
CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF
SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV
GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE
QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL

Sequences:

>Translated_684_residues
MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD
LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS
MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI
SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG
GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP
CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF
SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV
GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE
QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL
>Mature_684_residues
MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD
LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS
MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI
SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG
GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP
CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF
SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV
GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE
QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77786; Mature: 77786

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEG
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC
DYDLYDFVQQSEQITNKEFDLVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINH
CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCHHH
LLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLISMRTVTHDWVEDRENQVVFIG
HHHHHHHCCCCHHHHHCCHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEE
QQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEE
SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHT
ECCCEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDQHWHPRHRIQNLLDWVFGGELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQEL
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH
HRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDPCALLQQKGVPERIHEVRGEP
HHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCC
SSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF
CCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCCEEEE
SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPL
EEEECCCEEEEEEEEECCCEEECHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCHH
ALHLLQQNALGLGNCFVHSVGLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKEL
HHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH
GLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSEQDRKRIDQMLDPSHLLWQEE
CHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHH
VSQGNYGCLCYLNRCIFYESSGNL
HCCCCCEEEEEEEEEEEEECCCCC
>Mature Secondary Structure
MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEG
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC
DYDLYDFVQQSEQITNKEFDLVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINH
CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCHHH
LLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLISMRTVTHDWVEDRENQVVFIG
HHHHHHHCCCCHHHHHCCHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEE
QQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEE
SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHT
ECCCEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDQHWHPRHRIQNLLDWVFGGELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQEL
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH
HRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDPCALLQQKGVPERIHEVRGEP
HHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCC
SSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF
CCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCCEEEE
SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPL
EEEECCCEEEEEEEEECCCEEECHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCHH
ALHLLQQNALGLGNCFVHSVGLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKEL
HHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH
GLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSEQDRKRIDQMLDPSHLLWQEE
CHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHH
VSQGNYGCLCYLNRCIFYESSGNL
HCCCCCEEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA