| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607964
Identifier: 86607964
GI number: 86607964
Start: 478587
End: 480641
Strand: Reverse
Name: 86607964
Synonym: CYB_0470
Alternate gene names: NA
Gene position: 480641-478587 (Counterclockwise)
Preceding gene: 86607969
Following gene: 86607963
Centisome position: 15.78
GC content: 54.01
Gene sequence:
>2055_bases ATGCAAGACATCAAGGCCAATGCTCCGCGAATTCTCCTCAATTGGCCAACTCCGCCAGACTATATCCCGCCCCCGCAGCT TTCAGATCGGCAGGTCAGTCTTTGCCCCAAGAGGAGAGCCAAGGGCTTTGGACTAAACTTTGTCAATCTCTCTAAGGAAT TGGTGGAGTGCCCAGAGGGAGACTATGACCTCTATGACTTTGTGCAGCAGTCTGAGCAAATTACAAATAAGGAGTTTGAC CTAGTTATTGTTTGGACTTCCAGCTTTGACCAGAGTAATCCCCTAAATACAAGGAAGTTTAAATGCCCCACACTCTTGCT AGCTGGAGACACCCACCACTGGAAGTTTCCCATCAACCATCTCTTGGCCTACTGGGCTGCTGAAGGGTTTGATTACGTCG CTACTGCCTATAACTTCCAGCATTTGCACTGGTTTGCCGCAGCAGGCGCTGAGAATCTTGCCTGGTTGCCTCTTATCTCC ATGCGCACTGTTACCCACGATTGGGTGGAAGATAGAGAAAATCAAGTGGTCTTTATCGGCCAACAGGGATCCCGCCATCC CAGGCGTTGCCGGCTGGTTCAAGCCATAAAGAATGCAGATTTGCCCATCCTCATCAAAACAGCCAACCGCCAAGAGGCAG CCAAATGGTTTGCCCATTCTCTGATTTCCTTTAACTGCAGCCAAAATGGGGATCTGAACTTAAGGAACTTGGAAGTGATT TCCGCGGGGGGCTTTCTGCTTACTGACCAGCTCTCCTTCGCCTCAGGATTGGACGAACTTTTGGCGCCCGGCACCTACTG CGACACCTACAACTCCGAAGCCCAACTCCTGGAGAAAATCCGCTACTACCTAGACCATCCCCAGGAGGCCATTCAAATTG CCCGCCGCGCTTATCACACTTTCGACCAACACTGGCATCCCCGCCACCGCATTCAGAACCTGCTGGACTGGGTGTTTGGG GGAGAGCTGCCGGAGCCCTTTCGTTACTCGCCCCGCTCTGATGTGCGCTACTTTGTCAGCACGGCCAGCTCTGCCTGGAT AGACACACGACTAGGAATCTACGAGCCCATTCAAGAGCTGCATCGCGTGCAGGAGCGACTGAGGGTATTTGTTGGCCGAG GCTGTCCTGGGGTGATAGCCGCAGACTTGCTGGACCTGCCGCGGCTGGAGCTGTACGTGGAAGAGGGGTTTGGGGATCCC TGTGCCCTGCTGCAGCAGAAGGGAGTGCCCGAGCGAATTCACGAGGTGAGGGGGGAGCCGAGCAGTTGGCCCAGCTTTGA TGCGGTGGTGTGCACGGTGGGAGACTTGCAGCGGCTGGGGCGGCCTGTGAGGGCTAACTTTGCTTTTGTCTTGGCAGAGG ACCACCAACTTCTTTTGGCCAATGCCAGTAAGTTAATGGAAGCAGTGTTGCCTGGCTTTGACTTTGGCAAACTCAGGTTT TCGGTAAAGCTCTACCCAGACACCGTTTTTTACGAGAGGACGTATCTTAACTTTCCTGTGTTTCTGTCTAGTCAGGTGCA GACGGTTATCGACATCGGAGCTGGGGTAGGCCTTGGTAGCGTTTGTTTTCGGGGTTTCTGCCCTGAGGCGGCCATTCATT GTTTTGAGGTGGATCCCTTGGCCTTGCACCTGCTGCAGCAGAATGCTCTTGGCCTGGGCAACTGCTTTGTGCATTCGGTG GGGCTGGCGGGGCAGAATAGCTGCAGAACTTGTCGGCTCTGGCCGGAGGATCCTCAAGCGAAGTGGGGAGTGGAGCAGCT GCTCCCTTTCCGGGAAGCCAGGGCAGCTCTCAAGGAGCTGGGTCTGGAGTTCATCGATGTGCTCAGGGTGGCTACGGGTG GGGATGAGGTGGAGGTATTGGCTAACCTGCAGCCGCAGCTTAGGGACATCAAGGTGATTTACGTGGAGTTTACCTCTGAG CAAGACCGCAAGCGGATTGACCAGATGCTGGATCCCTCTCATCTCCTCTGGCAGGAGGAAGTTTCTCAGGGTAACTACGG GTGCTTATGTTATCTGAATAGATGCATATTCTACGAAAGCAGTGGTAATCTTTAG
Upstream 100 bases:
>100_bases TATCGTTTTCCAGGGCAACAGAGATCCCTTGTTGTTGTGTCCAATCCTAGTAGCCTGTAGGAGCTAGAAGAACCTGCCGC TCAACTTGGGGAGTCGAGAA
Downstream 100 bases:
>100_bases AAGGCAATCTTTAGGAAGCTCTGAGACTGATGAATCCTCGAGTTCTACTAGTTTGGACGACTCCACCTGATTATGTCCCA CCTCTCACTCTTTCAGAGCG
Product: FkbM family methyltransferase
Products: NA
Alternate protein names: TPR Repeat-Containing Protein; Methyltransferase FkbM
Number of amino acids: Translated: 684; Mature: 684
Protein sequence:
>684_residues MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL
Sequences:
>Translated_684_residues MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL >Mature_684_residues MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEGDYDLYDFVQQSEQITNKEFD LVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINHLLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLIS MRTVTHDWVEDRENQVVFIGQQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHTFDQHWHPRHRIQNLLDWVFG GELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQELHRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDP CALLQQKGVPERIHEVRGEPSSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPLALHLLQQNALGLGNCFVHSV GLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKELGLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSE QDRKRIDQMLDPSHLLWQEEVSQGNYGCLCYLNRCIFYESSGNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77786; Mature: 77786
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEG CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC DYDLYDFVQQSEQITNKEFDLVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINH CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCHHH LLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLISMRTVTHDWVEDRENQVVFIG HHHHHHHCCCCHHHHHCCHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEE QQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI CCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEE SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHT ECCCEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH FDQHWHPRHRIQNLLDWVFGGELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQEL HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH HRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDPCALLQQKGVPERIHEVRGEP HHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCC SSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF CCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCCEEEE SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPL EEEECCCEEEEEEEEECCCEEECHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCHH ALHLLQQNALGLGNCFVHSVGLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKEL HHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH GLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSEQDRKRIDQMLDPSHLLWQEE CHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHH VSQGNYGCLCYLNRCIFYESSGNL HCCCCCEEEEEEEEEEEEECCCCC >Mature Secondary Structure MQDIKANAPRILLNWPTPPDYIPPPQLSDRQVSLCPKRRAKGFGLNFVNLSKELVECPEG CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCC DYDLYDFVQQSEQITNKEFDLVIVWTSSFDQSNPLNTRKFKCPTLLLAGDTHHWKFPINH CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCHHH LLAYWAAEGFDYVATAYNFQHLHWFAAAGAENLAWLPLISMRTVTHDWVEDRENQVVFIG HHHHHHHCCCCHHHHHCCHHHEEEEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEE QQGSRHPRRCRLVQAIKNADLPILIKTANRQEAAKWFAHSLISFNCSQNGDLNLRNLEVI CCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHEECCCCCCCCEEEEEEEE SAGGFLLTDQLSFASGLDELLAPGTYCDTYNSEAQLLEKIRYYLDHPQEAIQIARRAYHT ECCCEEEECCHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH FDQHWHPRHRIQNLLDWVFGGELPEPFRYSPRSDVRYFVSTASSAWIDTRLGIYEPIQEL HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH HRVQERLRVFVGRGCPGVIAADLLDLPRLELYVEEGFGDPCALLQQKGVPERIHEVRGEP HHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHCCCC SSWPSFDAVVCTVGDLQRLGRPVRANFAFVLAEDHQLLLANASKLMEAVLPGFDFGKLRF CCCCCCCEEEEEHHHHHHCCCCCCCCEEEEEECCCEEEEHHHHHHHHHHHCCCCCCEEEE SVKLYPDTVFYERTYLNFPVFLSSQVQTVIDIGAGVGLGSVCFRGFCPEAAIHCFEVDPL EEEECCCEEEEEEEEECCCEEECHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCHH ALHLLQQNALGLGNCFVHSVGLAGQNSCRTCRLWPEDPQAKWGVEQLLPFREARAALKEL HHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHCCHHHHHHHHHHH GLEFIDVLRVATGGDEVEVLANLQPQLRDIKVIYVEFTSEQDRKRIDQMLDPSHLLWQEE CHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHH VSQGNYGCLCYLNRCIFYESSGNL HCCCCCEEEEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA