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The map label for this gene is rssA [H]

Identifier: 86607957

GI number: 86607957

Start: 468123

End: 469082

Strand: Reverse

Name: rssA [H]

Synonym: CYB_0463

Alternate gene names: 86607957

Gene position: 469082-468123 (Counterclockwise)

Preceding gene: 86607958

Following gene: 86607954

Centisome position: 15.4

GC content: 51.77

Gene sequence:

>960_bases
ATGGGCAAAAAACTGGGATTAGCACTGGGCAGCGGCGGAGCGAGGGGATGGGCTCATATTGGTGTGATTCGAGCTCTAGA
GCGGGCTGGGATCTCCGTTGACTACATTGCTGGGACGAGCATTGGCGCTTTTGTGGGAGCCATTTATGCAGCAGGAGAAC
TGGATGAGCTGGAAGACTTTGTGCGAGATCTCAACTGGAAGATGATCCTGTCTTTGTTTGATGTGGTCTTTCCCACCTGT
GGCCTGCTGGATGGCAACAAAATTTATGAGCTGCTGACAGAACATTTGCAAGAGCTGTGTATTGAAGAGGCCGGGATCCC
CTTTTGCTGTGTGGCTACCGACTTGATCACAGGCCAGGAGGTGCTGTTGCGTTCGGGCAAAATGGCAGATGCCGTGCGGG
CCAGCATCTCTATCCCAGGGATCTTTACACCCTTTTACTACGAAGGGCGCTATCTCGGAGATGGAGGCATTGTCAATCCG
GTGCCGGTGCGAGTGGTGCGGGAGATGGGGGCCGATGTTGTCATCGCGGTCAATCTCAACCATGTGGATCCCGCGGATGT
GGAGTCGCAACTGGAAGAAACAGAGGTGGAAGAAACCCTTCAACGGCGACAGCGCTTGAATGCTGAAGGAGAAGTGATCG
AAGAAGAAACCAACTTCATCACCCGCATTCGCAAACGCTATCAATCCCTACAACAAGGGATCCAAGAAAAAATTAGCCAA
TGGTTTCCAGATGAGCCCTCTGGTCCCAATATTTTCGACGTTATTGGCAAGACGTTGAACGTGATGGAGCAAATCGTTAC
CCGCAGTGTTTTAGCCGAACATCCGCCGGATTTGCCCTTACAACCCAAGCTGAGCCAGTATGGGATCTTCGATTTTCATC
AAGCAGATCCGATTATTCAGGAGGGCTATCGACAAATGCGGCGGGCCATTCCAGAATTGCGACAAAAGTTGGAGCAGTGA

Upstream 100 bases:

>100_bases
CTGCCTTCCGATCTGCGAGAAAGGGCAGGTACCTAATTGTTAGAGGGAGCAAGGTTTAGGATTCTTGAGGTCTTTTGGGT
CTCTTTTTGAGGGAGCAATC

Downstream 100 bases:

>100_bases
ACCACCACTTCTCCAGCAGTTCAACCTAAAGCTTTGCAAGGATCTGCAAGCCAAGCTTTCCAAACAATCTCAGATGGATC
CTGCTATCAAAATGGGCCTG

Product: patatin family phospholipase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MGKKLGLALGSGGARGWAHIGVIRALERAGISVDYIAGTSIGAFVGAIYAAGELDELEDFVRDLNWKMILSLFDVVFPTC
GLLDGNKIYELLTEHLQELCIEEAGIPFCCVATDLITGQEVLLRSGKMADAVRASISIPGIFTPFYYEGRYLGDGGIVNP
VPVRVVREMGADVVIAVNLNHVDPADVESQLEETEVEETLQRRQRLNAEGEVIEEETNFITRIRKRYQSLQQGIQEKISQ
WFPDEPSGPNIFDVIGKTLNVMEQIVTRSVLAEHPPDLPLQPKLSQYGIFDFHQADPIIQEGYRQMRRAIPELRQKLEQ

Sequences:

>Translated_319_residues
MGKKLGLALGSGGARGWAHIGVIRALERAGISVDYIAGTSIGAFVGAIYAAGELDELEDFVRDLNWKMILSLFDVVFPTC
GLLDGNKIYELLTEHLQELCIEEAGIPFCCVATDLITGQEVLLRSGKMADAVRASISIPGIFTPFYYEGRYLGDGGIVNP
VPVRVVREMGADVVIAVNLNHVDPADVESQLEETEVEETLQRRQRLNAEGEVIEEETNFITRIRKRYQSLQQGIQEKISQ
WFPDEPSGPNIFDVIGKTLNVMEQIVTRSVLAEHPPDLPLQPKLSQYGIFDFHQADPIIQEGYRQMRRAIPELRQKLEQ
>Mature_318_residues
GKKLGLALGSGGARGWAHIGVIRALERAGISVDYIAGTSIGAFVGAIYAAGELDELEDFVRDLNWKMILSLFDVVFPTCG
LLDGNKIYELLTEHLQELCIEEAGIPFCCVATDLITGQEVLLRSGKMADAVRASISIPGIFTPFYYEGRYLGDGGIVNPV
PVRVVREMGADVVIAVNLNHVDPADVESQLEETEVEETLQRRQRLNAEGEVIEEETNFITRIRKRYQSLQQGIQEKISQW
FPDEPSGPNIFDVIGKTLNVMEQIVTRSVLAEHPPDLPLQPKLSQYGIFDFHQADPIIQEGYRQMRRAIPELRQKLEQ

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=195, Percent_Identity=33.8461538461538, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI260656041, Length=195, Percent_Identity=33.8461538461538, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI116256487, Length=195, Percent_Identity=33.8461538461538, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI260656037, Length=195, Percent_Identity=33.8461538461538, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI260656043, Length=195, Percent_Identity=33.8461538461538, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI148727290, Length=193, Percent_Identity=34.7150259067358, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI148727335, Length=193, Percent_Identity=34.7150259067358, Blast_Score=115, Evalue=4e-26,
Organism=Escherichia coli, GI226510936, Length=310, Percent_Identity=36.4516129032258, Blast_Score=197, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI193204778, Length=189, Percent_Identity=35.978835978836, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71997299, Length=173, Percent_Identity=31.7919075144509, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71997289, Length=173, Percent_Identity=31.7919075144509, Blast_Score=92, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6323581, Length=190, Percent_Identity=33.1578947368421, Blast_Score=106, Evalue=5e-24,
Organism=Drosophila melanogaster, GI281376913, Length=192, Percent_Identity=34.375, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571388, Length=192, Percent_Identity=32.8125, Blast_Score=99, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 35538; Mature: 35407

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS01237 UPF0028

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKKLGLALGSGGARGWAHIGVIRALERAGISVDYIAGTSIGAFVGAIYAAGELDELEDF
CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHH
VRDLNWKMILSLFDVVFPTCGLLDGNKIYELLTEHLQELCIEEAGIPFCCVATDLITGQE
HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
VLLRSGKMADAVRASISIPGIFTPFYYEGRYLGDGGIVNPVPVRVVREMGADVVIAVNLN
HHHHCCCHHHHHHHHCCCCCCCCCCEECCEEECCCCCCCCHHHHHHHHCCCCEEEEEECC
HVDPADVESQLEETEVEETLQRRQRLNAEGEVIEEETNFITRIRKRYQSLQQGIQEKISQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFPDEPSGPNIFDVIGKTLNVMEQIVTRSVLAEHPPDLPLQPKLSQYGIFDFHQADPIIQ
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHCCHHHH
EGYRQMRRAIPELRQKLEQ
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKKLGLALGSGGARGWAHIGVIRALERAGISVDYIAGTSIGAFVGAIYAAGELDELEDF
CCCEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCHHHHHHH
VRDLNWKMILSLFDVVFPTCGLLDGNKIYELLTEHLQELCIEEAGIPFCCVATDLITGQE
HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
VLLRSGKMADAVRASISIPGIFTPFYYEGRYLGDGGIVNPVPVRVVREMGADVVIAVNLN
HHHHCCCHHHHHHHHCCCCCCCCCCEECCEEECCCCCCCCHHHHHHHHCCCCEEEEEECC
HVDPADVESQLEETEVEETLQRRQRLNAEGEVIEEETNFITRIRKRYQSLQQGIQEKISQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFPDEPSGPNIFDVIGKTLNVMEQIVTRSVLAEHPPDLPLQPKLSQYGIFDFHQADPIIQ
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHCCHHHH
EGYRQMRRAIPELRQKLEQ
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]