| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607839
Identifier: 86607839
GI number: 86607839
Start: 361401
End: 362072
Strand: Reverse
Name: 86607839
Synonym: CYB_0342
Alternate gene names: NA
Gene position: 362072-361401 (Counterclockwise)
Preceding gene: 86607840
Following gene: 86607838
Centisome position: 11.88
GC content: 60.27
Gene sequence:
>672_bases ATGCAACGATACCATAGGCTTGTCCGGTGGATCCCTGAAAAAAGGCCGGCTGGATCCGGCAGGAGGCGTTGGCTAGGAGT CGGTTTGTCGGTGGTTTTGGGCCTGGTCAGCACTCCTGGGCGCGTTAGGGGTGCGGAGCATTTCGTTCCGGCAAGAGGGG AAACTTGCCTGGCTGCTCCTCAGGTTTGGGCTGAGGCTCTAACGGAGCAGTTGCCTTTGTTTCTCAATCTGGCCTTGAGC CGCTCCCGCTCTGAGTTTCAGGTTGTGCTGGTGGGGAAGCCGGAGGTTGAAATGCTCTCTCCAGGGTCTCCGGCCCGCTT ACGCCAACAGGAGCTGGCTCCGGTTTTGCCGGACACCGCAACTGCTTCTCCAGAAGCTTTTCGGCTGTATTTCACCACGT TGGAGCGCCGCTTGGTCTTGGCAACCCCTGCGGAAAGCAGCGCCAACCCCTTGGCCGGTCGGCGTAGCGAAACTCTGCAA CTGGCCTACGAGGCTTATGTCCTGCGGGCTAACCCTGGGGATCCCTGGCGGTTGGTGCGTCTGCAGGTAACCGGATCGGG GATCCCCATTCGCGATGTCACGAATGGACTCACTGCCCAGGCCATCCGCCGCTGGCAACAGTCGGGTTGCCCCTTGACGG GCGATCTAGAGTTGACTAGACCTTCTCTCTAG
Upstream 100 bases:
>100_bases ATCCCGTGGCCGCCTTGCGGCGCTTCCAAGCCTTGTGGGATGCTGCTAGCTGAGAGGGTGGGGAGATGGTTTGGCCTGAT GTTGTCCTGGTGGTTCTGTG
Downstream 100 bases:
>100_bases CGGCGCGGAGCGCTTTGCGTCAGCATGAGTGCGGGAGTATGTCACGCGGGGAGATTCTCTTTTGGAAGTAACGAAGGGGC ACTTTTTCTCCCCAACCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MQRYHRLVRWIPEKRPAGSGRRRWLGVGLSVVLGLVSTPGRVRGAEHFVPARGETCLAAPQVWAEALTEQLPLFLNLALS RSRSEFQVVLVGKPEVEMLSPGSPARLRQQELAPVLPDTATASPEAFRLYFTTLERRLVLATPAESSANPLAGRRSETLQ LAYEAYVLRANPGDPWRLVRLQVTGSGIPIRDVTNGLTAQAIRRWQQSGCPLTGDLELTRPSL
Sequences:
>Translated_223_residues MQRYHRLVRWIPEKRPAGSGRRRWLGVGLSVVLGLVSTPGRVRGAEHFVPARGETCLAAPQVWAEALTEQLPLFLNLALS RSRSEFQVVLVGKPEVEMLSPGSPARLRQQELAPVLPDTATASPEAFRLYFTTLERRLVLATPAESSANPLAGRRSETLQ LAYEAYVLRANPGDPWRLVRLQVTGSGIPIRDVTNGLTAQAIRRWQQSGCPLTGDLELTRPSL >Mature_223_residues MQRYHRLVRWIPEKRPAGSGRRRWLGVGLSVVLGLVSTPGRVRGAEHFVPARGETCLAAPQVWAEALTEQLPLFLNLALS RSRSEFQVVLVGKPEVEMLSPGSPARLRQQELAPVLPDTATASPEAFRLYFTTLERRLVLATPAESSANPLAGRRSETLQ LAYEAYVLRANPGDPWRLVRLQVTGSGIPIRDVTNGLTAQAIRRWQQSGCPLTGDLELTRPSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24620; Mature: 24620
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRYHRLVRWIPEKRPAGSGRRRWLGVGLSVVLGLVSTPGRVRGAEHFVPARGETCLAAP CHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECH QVWAEALTEQLPLFLNLALSRSRSEFQVVLVGKPEVEMLSPGSPARLRQQELAPVLPDTA HHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCHHHHHHHCCCCCCCCC TASPEAFRLYFTTLERRLVLATPAESSANPLAGRRSETLQLAYEAYVLRANPGDPWRLVR CCCCHHHHHHEEHHCCEEEEECCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCCEEEEE LQVTGSGIPIRDVTNGLTAQAIRRWQQSGCPLTGDLELTRPSL EEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEECCCCC >Mature Secondary Structure MQRYHRLVRWIPEKRPAGSGRRRWLGVGLSVVLGLVSTPGRVRGAEHFVPARGETCLAAP CHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECH QVWAEALTEQLPLFLNLALSRSRSEFQVVLVGKPEVEMLSPGSPARLRQQELAPVLPDTA HHHHHHHHHHCCHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCHHHHHHHCCCCCCCCC TASPEAFRLYFTTLERRLVLATPAESSANPLAGRRSETLQLAYEAYVLRANPGDPWRLVR CCCCHHHHHHEEHHCCEEEEECCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCCEEEEE LQVTGSGIPIRDVTNGLTAQAIRRWQQSGCPLTGDLELTRPSL EEECCCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA