| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is cysW [H]
Identifier: 86607735
GI number: 86607735
Start: 245242
End: 246069
Strand: Reverse
Name: cysW [H]
Synonym: CYB_0236
Alternate gene names: 86607735
Gene position: 246069-245242 (Counterclockwise)
Preceding gene: 86607736
Following gene: 86607732
Centisome position: 8.08
GC content: 60.27
Gene sequence:
>828_bases ATGAAACCTGACGAGGTAGCAGGTGTCAAACCGAAGCCCTCAACATGGCTGTCGGGCCTGTTGATCGGGATCGTCGGGCT TTACATCGCGCTGCTGCTCGGGATCCCGGTGGTGAACATCTTCTATCAGGCGTTTCGAGAAGGGATCCCAGCCTTTCTCC ATCGCCTGACAGAGCGGGAGTTGCTCAGTGCCCTGCGATTGACGGTGCTAACCGCCCTGGTCGTTGTGCCCCTCAATACC TTTTTCGGCCTCTGTGCTGCCTTGGCCATTGCTCATCGGCGTTTTCCGGGGCGGGCGCTGCTGCTGAGCCTGATCGATCT GCCCTTTTCCATTTCCCCGGTGGTGGCTGGCCTAATGCTGGTGCTCATCTTCGGGCGTCAGGGTTGGCTGGGATCCTGGA GGGTTATCTTTGCATTTCCGGGCATTGTGTTGGCAACGGCTTTCATCACCCTTCCTTTTGTGGCGCGGGAAGTGTTGCCG GTGTTGGAGGAGGCAGGCACCGACCAGGAAGAAGCCGCCAAAACGCTGGGGGCGACCCCCTGGCAGATCTTCTGGAGAAT CACCCTGCCCAACATCCGCTGGGGCCTTCTGTACGGCGTCATCTTGACCAATGCCCGCGCCATGGGGGAGTTCGGCGCTG TGGCTGTGGTTTCCGGCAACATCATTGGCCGCACCCAGACCTTGCCCCTGTTCGTGGAAGATGCCTACCGCAGTTATGCC ACCGGCTCAGCCTATGCGGCGGCGGTGGTGCTCTCCTTGCTGGCGGTGGTAACCCTAGTGGCTAGGGAGTTCCTTGAGCG GGGATCCCATTCCCGCCGAGTCTTTTGA
Upstream 100 bases:
>100_bases CACGACTATGCTGGGGCAACCGTGATCGGAACGGTGATGTTGGGGATCTCTTTCCTGTCGCTGGTGGTAATTAACCTTCT GCAAGCCTGGGGAAGTCGCC
Downstream 100 bases:
>100_bases CGGTTGGGTTGGGGCTAGGCAGGCTCGGTGAGGATCTCTGGCAGACAAACCCTAGTGCCCCGCAGGCCGCAGTAGCCGCG CGGATTCTTGGCCAGATATT
Product: sulfate ABC transporter, permease protein CysW
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MKPDEVAGVKPKPSTWLSGLLIGIVGLYIALLLGIPVVNIFYQAFREGIPAFLHRLTERELLSALRLTVLTALVVVPLNT FFGLCAALAIAHRRFPGRALLLSLIDLPFSISPVVAGLMLVLIFGRQGWLGSWRVIFAFPGIVLATAFITLPFVAREVLP VLEEAGTDQEEAAKTLGATPWQIFWRITLPNIRWGLLYGVILTNARAMGEFGAVAVVSGNIIGRTQTLPLFVEDAYRSYA TGSAYAAAVVLSLLAVVTLVAREFLERGSHSRRVF
Sequences:
>Translated_275_residues MKPDEVAGVKPKPSTWLSGLLIGIVGLYIALLLGIPVVNIFYQAFREGIPAFLHRLTERELLSALRLTVLTALVVVPLNT FFGLCAALAIAHRRFPGRALLLSLIDLPFSISPVVAGLMLVLIFGRQGWLGSWRVIFAFPGIVLATAFITLPFVAREVLP VLEEAGTDQEEAAKTLGATPWQIFWRITLPNIRWGLLYGVILTNARAMGEFGAVAVVSGNIIGRTQTLPLFVEDAYRSYA TGSAYAAAVVLSLLAVVTLVAREFLERGSHSRRVF >Mature_275_residues MKPDEVAGVKPKPSTWLSGLLIGIVGLYIALLLGIPVVNIFYQAFREGIPAFLHRLTERELLSALRLTVLTALVVVPLNT FFGLCAALAIAHRRFPGRALLLSLIDLPFSISPVVAGLMLVLIFGRQGWLGSWRVIFAFPGIVLATAFITLPFVAREVLP VLEEAGTDQEEAAKTLGATPWQIFWRITLPNIRWGLLYGVILTNARAMGEFGAVAVVSGNIIGRTQTLPLFVEDAYRSYA TGSAYAAAVVLSLLAVVTLVAREFLERGSHSRRVF
Specific function: Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4208
COG function: function code P; ABC-type sulfate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI87082099, Length=261, Percent_Identity=48.2758620689655, Blast_Score=244, Evalue=7e-66, Organism=Escherichia coli, GI1788764, Length=202, Percent_Identity=42.0792079207921, Blast_Score=147, Evalue=7e-37, Organism=Escherichia coli, GI1786980, Length=222, Percent_Identity=35.1351351351351, Blast_Score=99, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011866 - InterPro: IPR005667 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 29940; Mature: 29940
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPDEVAGVKPKPSTWLSGLLIGIVGLYIALLLGIPVVNIFYQAFREGIPAFLHRLTERE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLSALRLTVLTALVVVPLNTFFGLCAALAIAHRRFPGRALLLSLIDLPFSISPVVAGLML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH VLIFGRQGWLGSWRVIFAFPGIVLATAFITLPFVAREVLPVLEEAGTDQEEAAKTLGATP HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC WQIFWRITLPNIRWGLLYGVILTNARAMGEFGAVAVVSGNIIGRTQTLPLFVEDAYRSYA CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCHHHHHHHHHHHC TGSAYAAAVVLSLLAVVTLVAREFLERGSHSRRVF CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKPDEVAGVKPKPSTWLSGLLIGIVGLYIALLLGIPVVNIFYQAFREGIPAFLHRLTERE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLSALRLTVLTALVVVPLNTFFGLCAALAIAHRRFPGRALLLSLIDLPFSISPVVAGLML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH VLIFGRQGWLGSWRVIFAFPGIVLATAFITLPFVAREVLPVLEEAGTDQEEAAKTLGATP HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC WQIFWRITLPNIRWGLLYGVILTNARAMGEFGAVAVVSGNIIGRTQTLPLFVEDAYRSYA CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCCCHHHHHHHHHHHC TGSAYAAAVVLSLLAVVTLVAREFLERGSHSRRVF CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1708375 [H]