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The map label for this gene is rpoE [H]

Identifier: 86607732

GI number: 86607732

Start: 242791

End: 243252

Strand: Reverse

Name: rpoE [H]

Synonym: CYB_0232

Alternate gene names: 86607732

Gene position: 243252-242791 (Counterclockwise)

Preceding gene: 86607735

Following gene: 86607727

Centisome position: 7.98

GC content: 57.36

Gene sequence:

>462_bases
GTGCAGGCGGCAAAGGATACATCCGATTGGGAGCTGATCCAGCGCTGCCTCAACGGCGACAGCCAGAGCTTTCGCCAACT
CTACCGCAAATACCAGCAGTCGGTACGGAATATCCTCTATCCCTTGTGTGGAGCCGATCTTTTGGATGACCTGGTACAGG
AAGTGTTTATTCGTGCCTGGAAAGGGTTGCCTCGGTTTCGCGGCTCGGCCCAGTTTTCCACTTGGCTGTATCGCATCTGC
TGGAATGTGGCCTCAGATCAGCGACGGCGCTGCGCCCGGCAACACTCCCAAACCCAAAACCTGGCCCTCGGATCGGATAT
CGCTCACCCTGGCCCCGACCTGATGCACTTGCACTACCAACAGGCTCTACAGCAAAGCATGGCTCAGCTCAGCCCCGAAC
ACAGAATGGTTGTAAACTACCCGACCCTGACTGCTTCGCAGTACAGGGCGGGCTTTCGGTAG

Upstream 100 bases:

>100_bases
GGCGGGAAGTGGAGGGCCATCGTAGACAGGGATCCTTTGAACCTTTTGGGGGCATTGGGAGTCAGACAAAGCAAGGTTGA
GAACAAGGGAGCGTCCTCTC

Downstream 100 bases:

>100_bases
CCCTGCAGTTGGCAAGCCAACCACGAACCTCTAGGCTGGTTCACAGCAGCCCCCAAAAGCGCAATCACATTCGCACCATT
CAAATCCGCATCCCCTTCCC

Product: sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MQAAKDTSDWELIQRCLNGDSQSFRQLYRKYQQSVRNILYPLCGADLLDDLVQEVFIRAWKGLPRFRGSAQFSTWLYRIC
WNVASDQRRRCARQHSQTQNLALGSDIAHPGPDLMHLHYQQALQQSMAQLSPEHRMVVNYPTLTASQYRAGFR

Sequences:

>Translated_153_residues
MQAAKDTSDWELIQRCLNGDSQSFRQLYRKYQQSVRNILYPLCGADLLDDLVQEVFIRAWKGLPRFRGSAQFSTWLYRIC
WNVASDQRRRCARQHSQTQNLALGSDIAHPGPDLMHLHYQQALQQSMAQLSPEHRMVVNYPTLTASQYRAGFR
>Mature_153_residues
MQAAKDTSDWELIQRCLNGDSQSFRQLYRKYQQSVRNILYPLCGADLLDDLVQEVFIRAWKGLPRFRGSAQFSTWLYRIC
WNVASDQRRRCARQHSQTQNLALGSDIAHPGPDLMHLHYQQALQQSMAQLSPEHRMVVNYPTLTASQYRAGFR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=151, Percent_Identity=28.476821192053, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17832; Mature: 17832

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAAKDTSDWELIQRCLNGDSQSFRQLYRKYQQSVRNILYPLCGADLLDDLVQEVFIRAW
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KGLPRFRGSAQFSTWLYRICWNVASDQRRRCARQHSQTQNLALGSDIAHPGPDLMHLHYQ
HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QALQQSMAQLSPEHRMVVNYPTLTASQYRAGFR
HHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCC
>Mature Secondary Structure
MQAAKDTSDWELIQRCLNGDSQSFRQLYRKYQQSVRNILYPLCGADLLDDLVQEVFIRAW
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KGLPRFRGSAQFSTWLYRICWNVASDQRRRCARQHSQTQNLALGSDIAHPGPDLMHLHYQ
HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
QALQQSMAQLSPEHRMVVNYPTLTASQYRAGFR
HHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]