Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86606806

Identifier: 86606806

GI number: 86606806

Start: 2177856

End: 2180051

Strand: Reverse

Name: 86606806

Synonym: CYA_2166

Alternate gene names: NA

Gene position: 2180051-2177856 (Counterclockwise)

Preceding gene: 86606807

Following gene: 86606805

Centisome position: 74.33

GC content: 49.5

Gene sequence:

>2196_bases
TTGCCAATGAGAATGCTTCAGCAGGAAGTTCCAGTTATCCTCAATCGCTTTCTTGTTAAGGAGCTAACTCAGGAAGACCT
CACCTTTTATGAGTACGACTGTAGGCCAAACCCACCCCCGGAGCTAGGAGAAGAGCAGAGAGCTATCGCTAGGGTTTGCA
ATCGGCTAGATGTAATAGCTGCTCGTTTGGGAAGTCGCATTATCACGCAGGAAAGAGTTTCGCCCAGCCAGCTCAAAACA
CCAGAGTGGGAGTTGGAAGAGCGTGGGCTTAGGGTTCTAACCTGTGCCAATGCTCAAGAAAGAAGCGCCCTCGAAAGCTT
TGAGCGCAAGAGGATAGGGTTGCGCCTTAAATCTCAGTACAAGAAAACTGAAGTCGAATGGATAGGAGGCGGCCTGCTCT
GGTGGGTGACTGCTCAGAAAGGGGTAGAACTTTCCGGAGAAGGCTGGGAAATCCACAGAGGGAGAATGATAGATGTTGCC
GTCGAACCAGACGGAAAGCTTTACTTAGAAGTCGATATTCATTACCGCTTCTACACGCCGTGGACTTTGCATGAATGGTT
GGAAAGCTATCCGGACGTTCCAATCGAGATTGTGCGAAATACATACTTTGATGCGAACGGCAAACGTTTGACTTGGAAAT
ATCTGGGTATTCTTTCTAACCAATCCCCACGGGAGATTCGGTTACCAGAGCAGAACATCAGTCTGGCGGAGTATCATTTG
CAGAAGTACAATGCACTTGTAGAAGAAGTTGAGAGCTCTTGGGTAGTCGAAGTAGCATCAAAGGAAAGACGTTATCCCCA
TCTCTCCCGAAGGTTATCGCCTGCTTTAACCTTGGAGATGCTAGCCAGTCTAGAAGACAACAGAAGCCCTGGCGGAAAAG
TTAGCGCCGCTGTTATCGAGTGCATCAGAAAAAGTTTGAAAGAACGATTCGAAGAGTCCGAAGAGACTGCGAGGACCATT
ATAAAGGAAGTCTACAAACTTTCCCCTGAGGAAATTAAGCCGCTAAAGACTCAAGGCTACATCCTGCCCAAGCCAAAGCT
ATTGGGATCGGGTCGCAGACCAGTTGAAAATCCTGCTCGGGTTAGATACCGGGGATGTGCGAAGGTAGGCGAGACCAAGT
TTGCATGTCTAAACCTCTATGACGACAAGCGAGAGTACCCTAGCGAAGTGCTCAACTGCTTGCTTGAGGTAGCCCAAAAA
AGCGGCGCGGAAATTGAAGTAGACTTCTATGCCACTCAGCAAGACTTGCCTAAGGGCGATCTCGCCCGAAAAAGGTTCTG
GCAAACCTGGGCTGAGCAAGGGATCAAAACGGTTTTGGTCGTTATGCCTTGGTCACCCAATGAGCGCAAGCAAAGGATCC
GCATGGAGGCCCTTGAAGCAGGGATAGCGACTCAGTTTATGATCCCTGGGGCTGATCCATACAAGGCTCTAAACGTCGTC
CTCGGGCTTCTGTGCAAGGCAGCGTGGCAGCCGGTACTCCTGGAACCCCTCGACGATCCTGTAGGCCCTGAGCTGATCAT
CGGCTTCGATGTGGGAACCAATCGGCGGCTATACTACGGAGCCTCTGCTTTCGCTGTTCTGGCTGATGGGCAGAGCTTAG
GTTGGGAGCTACCTGCTGTGCAGAGAGGAGAAACCTTCTCCGGGGACGCAATTTATCAAACTGTGTCCAAACTTGTCGAT
AGGTTTTATGACAAGCTTAGCCGATATCCAAGCAAGGTTCTCTTGATGAGGGATGGTTTAGTTCAAGGAGGCGAATTTAG
TAGAACAATTGAGGAGCTAGAAAAAGAAAAGATTGCTGTGGATATTGTTGGCATACGCAAAAGCGGTACAGGAAGAATGG
GGATAGAAGAAGGAAAAGGTAAGTACAAAGATGCCAAAATAGGCACTGTTGTTTTCGACTACTCGCGAAAGTCGTTTACT
CTAATAACAAGCCAGCCCATTAGAAAAGGTGGGAACTCCCTCGGCAGTGCAAGACCTCTGCGAGCGATCCACGAGCACGG
CAAGACTCCCTTGGAAGTTCTGGCTTTACAAACCTATCACCTCTCTCAACTTCATCCTGCCAGTGGCTTCCAAGCCTGTA
GGCTGCCCTGGGTGCTCCATTTTGCCGACAAAAGCGGCAAGGAGTTCCAGCGCCTTGGCGATAACATCTTCAGTATCCTG
CAAAACATAGATCGCCAGAAATTGATTGCCGTCTAG

Upstream 100 bases:

>100_bases
CTGGCTCCGCCCGAGTTGTTTCAGCTCTAACCTAGGGGGATCCCCAAGGCGCGATCGGGAAAATTAGGGCTTATTCTAGA
GAGAAGCTTGAACTCAGAGG

Downstream 100 bases:

>100_bases
CAGGGTAGGGGGTTCTTCCCTGTGGGCCCTGCTAGGATGGGGAAGGGTTTGAGATGCCAACTATGTTTACTCCCAACGAG
GTCTGGAAGACCTTTCTGAG

Product: piwi domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKT
PEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVA
VEPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL
QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTI
IKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQK
SGAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV
LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVD
RFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFT
LITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL
QNIDRQKLIAV

Sequences:

>Translated_731_residues
MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKT
PEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVA
VEPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL
QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTI
IKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQK
SGAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV
LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVD
RFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFT
LITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL
QNIDRQKLIAV
>Mature_730_residues
PMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIAARLGSRIITQERVSPSQLKTP
EWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQYKKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAV
EPDGKLYLEVDIHYRFYTPWTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHLQ
KYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIECIRKSLKERFEESEETARTII
KEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPARVRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKS
GAEIEVDFYATQQDLPKGDLARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVVL
GLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAVQRGETFSGDAIYQTVSKLVDR
FYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAVDIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTL
ITSQPIRKGGNSLGSARPLRAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSILQ
NIDRQKLIAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83278; Mature: 83147

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIA
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARLGSRIITQERVSPSQLKTPEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQY
HHHCCHHHHHHCCCHHHCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH
KKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAVEPDGKLYLEVDIHYRFYTP
HHCCCEEECCCEEEEEEECCCCEECCCCEEEECCEEEEEEECCCCEEEEEEEEEEEEECC
WTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL
HHHHHHHHHCCCCCHHHHHHCEECCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHH
QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIE
HHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
CIRKSLKERFEESEETARTIIKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCCCHHCCCCCCCCCCCHH
VRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKSGAEIEVDFYATQQDLPKGD
HHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH
LARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV
HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAV
HHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCC
QRGETFSGDAIYQTVSKLVDRFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEE
DIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTLITSQPIRKGGNSLGSARPL
EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCCCCCHHH
RAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL
HHHHHCCCCCHHHHEEHHHHHHHCCCCCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHH
QNIDRQKLIAV
HCCCHHHHCCC
>Mature Secondary Structure 
PMRMLQQEVPVILNRFLVKELTQEDLTFYEYDCRPNPPPELGEEQRAIARVCNRLDVIA
CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
ARLGSRIITQERVSPSQLKTPEWELEERGLRVLTCANAQERSALESFERKRIGLRLKSQY
HHHCCHHHHHHCCCHHHCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHH
KKTEVEWIGGGLLWWVTAQKGVELSGEGWEIHRGRMIDVAVEPDGKLYLEVDIHYRFYTP
HHCCCEEECCCEEEEEEECCCCEECCCCEEEECCEEEEEEECCCCEEEEEEEEEEEEECC
WTLHEWLESYPDVPIEIVRNTYFDANGKRLTWKYLGILSNQSPREIRLPEQNISLAEYHL
HHHHHHHHHCCCCCHHHHHHCEECCCCCEEEEEEEEECCCCCCCEEECCCCCCHHHHHHH
QKYNALVEEVESSWVVEVASKERRYPHLSRRLSPALTLEMLASLEDNRSPGGKVSAAVIE
HHHHHHHHHHHHHHEEEEHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
CIRKSLKERFEESEETARTIIKEVYKLSPEEIKPLKTQGYILPKPKLLGSGRRPVENPAR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCCCHHCCCCCCCCCCCHH
VRYRGCAKVGETKFACLNLYDDKREYPSEVLNCLLEVAQKSGAEIEVDFYATQQDLPKGD
HHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCH
LARKRFWQTWAEQGIKTVLVVMPWSPNERKQRIRMEALEAGIATQFMIPGADPYKALNVV
HHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
LGLLCKAAWQPVLLEPLDDPVGPELIIGFDVGTNRRLYYGASAFAVLADGQSLGWELPAV
HHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCC
QRGETFSGDAIYQTVSKLVDRFYDKLSRYPSKVLLMRDGLVQGGEFSRTIEELEKEKIAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCEEE
DIVGIRKSGTGRMGIEEGKGKYKDAKIGTVVFDYSRKSFTLITSQPIRKGGNSLGSARPL
EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCCCCCHHH
RAIHEHGKTPLEVLALQTYHLSQLHPASGFQACRLPWVLHFADKSGKEFQRLGDNIFSIL
HHHHHCCCCCHHHHEEHHHHHHHCCCCCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHH
QNIDRQKLIAV
HCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA