| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is yfcK [C]
Identifier: 86606743
GI number: 86606743
Start: 2119978
End: 2120823
Strand: Reverse
Name: yfcK [C]
Synonym: CYA_2103
Alternate gene names: 86606743
Gene position: 2120823-2119978 (Counterclockwise)
Preceding gene: 86606747
Following gene: 86606742
Centisome position: 72.31
GC content: 65.96
Gene sequence:
>846_bases TTGACCACAGGGGATGGATCCCTGACCTTTTTCTCCCAAGAGTTCGGGCAGGCTTTCCATAACACCAGCGGCGCTGCCCA GGAAGCGCTGGAGAAGTTTGTCCGCCCTTGCCGGCTGGATCGCCTGCCGTTGGAGCGGGATCCGGACGATCCCATTCGCC TCTTGGATATTTGCTTTGGCCTCGGCTACAACTCCGGCCTGGCCTTGGAGACGATTTGGCAGGTGCGGCCCGATTGCCCT GTGGAAGTCATTGGCCTGGAGCGATCCCCAGAGGTGCCCCGCCAGGCCTGGCAGGTGGGGGTGGGATCCACCTGGAGCTT TGGCCAGGAGTGGCAACACTTGATCGAGCAGGGATCCTGGCAATCGCCGCGCTGGCGGGGAACCCTGCTGTGGGGAGATG CCCGGCAAACCCTGCTCCAGGTGCCGCCGGGATGGGCGGATGCGGTGTTTTTGGATCCCTTCTCCCCTTCGGTTTGCCCG GAGCTGTGGACGGTGGACTTCTTGCGGGCAGTGGCCGAGCGAATGCGCCCCAGCGGGATCCTGGCCACCTATTCCTGTGC GGCGGCGGTGCGGGCGGCCTTGCTGGAGGCGGGGCTATTCATTGGCTCGACGCCGCCGGTGGGCCGCCCCTGGCCGGGCA CGGTGGCCTCGCCCCAACCGCATCACCTGCCGCCCCTCTCGCCCATGGAGTGGGAGCACCTGCGAACCCGCGCCGCGGTG CCCTACCGGGATCCTACCTTGCAAGGGGATAGAGCCCAGATTCGGCTGCAACGCCAGCGAGAACAGCAAACTTCACCCCT TGAGCCCACTTCCGCCTGGAAACGCCGCTGGCCTGTGCAAGCCTAG
Upstream 100 bases:
>100_bases CTGCGAAACTCATCTTAACGTTCTCAAGCTATCAAAGAATCGCCAAGCTGGAAATAGAGACTTGCAATAGCCCATGACCG CAGAAACCCAGTGGCAGGTG
Downstream 100 bases:
>100_bases CGACCGGAGTGCAGATCTGGGCAGCTTTTGCCGGAATTGCTGTCTGAGTGTATCCAAGACACCTGCACCAGTCCCGTACC CTTACGCAAGCTGCCGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTTGDGSLTFFSQEFGQAFHNTSGAAQEALEKFVRPCRLDRLPLERDPDDPIRLLDICFGLGYNSGLALETIWQVRPDCP VEVIGLERSPEVPRQAWQVGVGSTWSFGQEWQHLIEQGSWQSPRWRGTLLWGDARQTLLQVPPGWADAVFLDPFSPSVCP ELWTVDFLRAVAERMRPSGILATYSCAAAVRAALLEAGLFIGSTPPVGRPWPGTVASPQPHHLPPLSPMEWEHLRTRAAV PYRDPTLQGDRAQIRLQRQREQQTSPLEPTSAWKRRWPVQA
Sequences:
>Translated_281_residues MTTGDGSLTFFSQEFGQAFHNTSGAAQEALEKFVRPCRLDRLPLERDPDDPIRLLDICFGLGYNSGLALETIWQVRPDCP VEVIGLERSPEVPRQAWQVGVGSTWSFGQEWQHLIEQGSWQSPRWRGTLLWGDARQTLLQVPPGWADAVFLDPFSPSVCP ELWTVDFLRAVAERMRPSGILATYSCAAAVRAALLEAGLFIGSTPPVGRPWPGTVASPQPHHLPPLSPMEWEHLRTRAAV PYRDPTLQGDRAQIRLQRQREQQTSPLEPTSAWKRRWPVQA >Mature_280_residues TTGDGSLTFFSQEFGQAFHNTSGAAQEALEKFVRPCRLDRLPLERDPDDPIRLLDICFGLGYNSGLALETIWQVRPDCPV EVIGLERSPEVPRQAWQVGVGSTWSFGQEWQHLIEQGSWQSPRWRGTLLWGDARQTLLQVPPGWADAVFLDPFSPSVCPE LWTVDFLRAVAERMRPSGILATYSCAAAVRAALLEAGLFIGSTPPVGRPWPGTVASPQPHHLPPLSPMEWEHLRTRAAVP YRDPTLQGDRAQIRLQRQREQQTSPLEPTSAWKRRWPVQA
Specific function: Unknown
COG id: COG4121
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008471 [H]
Pfam domain/function: PF05430 DUF752 [H]
EC number: NA
Molecular weight: Translated: 31563; Mature: 31432
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGDGSLTFFSQEFGQAFHNTSGAAQEALEKFVRPCRLDRLPLERDPDDPIRLLDICFG CCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH LGYNSGLALETIWQVRPDCPVEVIGLERSPEVPRQAWQVGVGSTWSFGQEWQHLIEQGSW CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCC QSPRWRGTLLWGDARQTLLQVPPGWADAVFLDPFSPSVCPELWTVDFLRAVAERMRPSGI CCCCEEEEEEECHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC LATYSCAAAVRAALLEAGLFIGSTPPVGRPWPGTVASPQPHHLPPLSPMEWEHLRTRAAV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC PYRDPTLQGDRAQIRLQRQREQQTSPLEPTSAWKRRWPVQA CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC >Mature Secondary Structure TTGDGSLTFFSQEFGQAFHNTSGAAQEALEKFVRPCRLDRLPLERDPDDPIRLLDICFG CCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH LGYNSGLALETIWQVRPDCPVEVIGLERSPEVPRQAWQVGVGSTWSFGQEWQHLIEQGSW CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCC QSPRWRGTLLWGDARQTLLQVPPGWADAVFLDPFSPSVCPELWTVDFLRAVAERMRPSGI CCCCEEEEEEECHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC LATYSCAAAVRAALLEAGLFIGSTPPVGRPWPGTVASPQPHHLPPLSPMEWEHLRTRAAV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC PYRDPTLQGDRAQIRLQRQREQQTSPLEPTSAWKRRWPVQA CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]