| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is kch [C]
Identifier: 86606747
GI number: 86606747
Start: 2123364
End: 2125556
Strand: Reverse
Name: kch [C]
Synonym: CYA_2106
Alternate gene names: 86606747
Gene position: 2125556-2123364 (Counterclockwise)
Preceding gene: 86606748
Following gene: 86606743
Centisome position: 72.48
GC content: 62.65
Gene sequence:
>2193_bases ATGGTGGGCTCCCCTTCTCAAGGGCCGGATGAGCAACTGCAAGACAATGGCCGGGATCCAGGTGCTTTCCTCCTAGTCTG TGGCTACAACGACTTGGCAGCGTTGACGCTGCAGATTCTGGAAGACTTTGGACAGCGCGCGGTGGTGGTGGCTCCTGGCC CGCGGCCTTCTTTGTTAAAGGAACCGTGGCAATACGTAGAGGGGGATCCCCATCAGCCGGAGGTGCTGCGCCGGGCTGGG ATCGAGCGGATCAAGGTGGCGCTGCTGCTGGAGGACAACGACCAGGCCAACTTCGAGCTGGCCCTCTTGATTCGAGATCT CAACCCGCAGGCGCGCATTGTCTCTCGTCTGTTTAACACCGGCCTTGCCCGCTACCTGGACTCGATTTTGCCGCAGCATT TTTCCCTATCGGTTGCCGGCTTAGCGGCTCCGGCCTTTGCCCTCAAGGCTGTCTCGGACGAATTTGTCGGCTACTTCGAG CTGCCCCAGTTGGAGGCTCAGCCGGCCACGCTGCCGCCGGAGCTGGCCGATCCGCTTTATTTGGGCGCCCCCCAAGAGAC CACCCTCTGGAACGTGGTGGAGCTGACCATCGGCTACAACTCCCGTCTGCTGCACATGCCCCTCGCGGAACTGGAGGAAA CCTTTGGGGCGCGGGTGCTGTTCCACTACCCGGTGGACGGGCTGTCCGACTTTTCCGAGTCTCGGGTTTTCGACGATTTC GACCACGAGGCAGAGCTGCTGGAGGGGGATCGCATTTTGGTGATCTGCGACCCCAGATCCTATCTGCAACTGTTGGAGCG CAACGGGCGGCGCGGCTCTTCGCGGGCCCAACGCTGGGCCAGCGGACAGGCGCAAGACAGGCGACAACAACGGCGAGGCA AGTCGTTCGGGCGGGGCCTCCTATCTTGGCTGCGCAGAAGCCTGCAGGGACTGCTGCAGGTCAAGCCCATCGTGCATACC CTCACCTTCACCTTGGGGGCGATGTTGGTGCTGGGGGTCATTAATTTCAGAATTATCGGCAAATCTGTGGTTGACGGGCT GCTGCTGACCATCGTGGTGTTGACAGGGGGGTATGGCGACATCGAGGCTTTTCAGCAGGCGGAGACGCCGCTGGGGGTGA AGGTGGTGGCGGTGGTCATGACCTTGGTGGGAGCTGCCCTGGTGGGGTTGATCTACGGGTTGGTGACCGACAAGTTGGTG AGCAGCCGCTTTGGCTTGGGCCGAGCCGCCCGTATGCCCAAAGCGGATCATGTGGTGATTGCCGGTTTGGGGCGGCTAAG CTACTTGGTGCTGCAGTTGTTGCGGCAGATGGGCTATGAGGTGGTGGTGGTGGAGCCCGACAGCGACAACCCTCTGGTGG AAGCGGCGGAACGGGAGGGGGCGGTGGTGATTCGGGGCAACTACGCTCTGGCCAGCACGCTGCAACAGGCTCGCATCCAA AGCAGCCGCTGCCTGATCTGCACGACGCCTGACGATCTCACCAACCTCGAGACCGCCCTGACCGCCCACAGCCTGCAACC GGGGATCCGCACCATCTTGCGGGTTACCGATCCCCAGGTGGCGGCGCGGATGCAGCGGCATCTGCAGACGCTGGGAACCA GCTACAGCACCACCGCCCTGGGGGCGCGCGCTTTTGCCACGGCAGCGCTGGTGGGATCCGTTTACGGCACCTTAACTTGG GAGGGGGAAACGCTGCTGGTGACGCTGCTGGAGGTCTCGCCTTCCAGCCCTTACCTGGGGCTGTCCCTGCGGCAACTGGC CCAGGATTACGACCTGGCAATTTTGCTGCATCACTCCCGACCGGGCCGGCCCTGTGTTTTCCCCAAGATCTGGCAGAAAG AGGGCGAGACGGTGTTGAAGCGGGGGGATCGCCTGTATGTGATGGGGACGGTGGGATCTCTGATTCGCCTGGCCCAGGGA CGCCCTCTGCCGCCGGAGCTGTATCAAGTGCGCCTTTTGGAATGTCGCAACCCCTACTTTGAAGACGAGATCCTCTCCAC CTTGGCGTTTTATGCGCGGCTGCCCAAGACGGCCCTGAAGCCGCTGTTGCGCTGTCTGCCGGCGGTGGTGAGCCCCCCTC TCCCCCGCGACAAGGCGATTAAGTTGGCCCGCCAACTGCGCAAAATGAGCACCGAGGTGCAGGTGTTTGCCCAGGTGCAG TCCGGCGAGCGGCGGATCCTTGAAGTCCTCTAG
Upstream 100 bases:
>100_bases TGGCCGGGCAAGGGGATCCCTTACTGGAATAGAATATTTTGGGTAGGTCGGGGTTTTAGAGCTGCCTTGGGTATAAAGGG AGCAGGGTGGATGGTGGAGT
Downstream 100 bases:
>100_bases GGCTTTTCGGCCACAAGACGCACAAAGCGATTTTGCCCGTAGAGCTCCTGGGCCACGACTCTTAAACCAACCTTCTCCAA CAGCCAGGCCAAGTCCTCGG
Product: TrkA domain-containing protein
Products: K (I) [Cytoplasm] [C]
Alternate protein names: TrkA-N Domain-Containing Protein; TrkA-N Domain Family; TrkA-N; TrkA-N Domain Protein; TrkA-C Domain-Containing Protein; Regulator Of K+ Conductance; Potassium Channel; TrkA Family Protein; TrkA Family Potassium Channel Protein
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MVGSPSQGPDEQLQDNGRDPGAFLLVCGYNDLAALTLQILEDFGQRAVVVAPGPRPSLLKEPWQYVEGDPHQPEVLRRAG IERIKVALLLEDNDQANFELALLIRDLNPQARIVSRLFNTGLARYLDSILPQHFSLSVAGLAAPAFALKAVSDEFVGYFE LPQLEAQPATLPPELADPLYLGAPQETTLWNVVELTIGYNSRLLHMPLAELEETFGARVLFHYPVDGLSDFSESRVFDDF DHEAELLEGDRILVICDPRSYLQLLERNGRRGSSRAQRWASGQAQDRRQQRRGKSFGRGLLSWLRRSLQGLLQVKPIVHT LTFTLGAMLVLGVINFRIIGKSVVDGLLLTIVVLTGGYGDIEAFQQAETPLGVKVVAVVMTLVGAALVGLIYGLVTDKLV SSRFGLGRAARMPKADHVVIAGLGRLSYLVLQLLRQMGYEVVVVEPDSDNPLVEAAEREGAVVIRGNYALASTLQQARIQ SSRCLICTTPDDLTNLETALTAHSLQPGIRTILRVTDPQVAARMQRHLQTLGTSYSTTALGARAFATAALVGSVYGTLTW EGETLLVTLLEVSPSSPYLGLSLRQLAQDYDLAILLHHSRPGRPCVFPKIWQKEGETVLKRGDRLYVMGTVGSLIRLAQG RPLPPELYQVRLLECRNPYFEDEILSTLAFYARLPKTALKPLLRCLPAVVSPPLPRDKAIKLARQLRKMSTEVQVFAQVQ SGERRILEVL
Sequences:
>Translated_730_residues MVGSPSQGPDEQLQDNGRDPGAFLLVCGYNDLAALTLQILEDFGQRAVVVAPGPRPSLLKEPWQYVEGDPHQPEVLRRAG IERIKVALLLEDNDQANFELALLIRDLNPQARIVSRLFNTGLARYLDSILPQHFSLSVAGLAAPAFALKAVSDEFVGYFE LPQLEAQPATLPPELADPLYLGAPQETTLWNVVELTIGYNSRLLHMPLAELEETFGARVLFHYPVDGLSDFSESRVFDDF DHEAELLEGDRILVICDPRSYLQLLERNGRRGSSRAQRWASGQAQDRRQQRRGKSFGRGLLSWLRRSLQGLLQVKPIVHT LTFTLGAMLVLGVINFRIIGKSVVDGLLLTIVVLTGGYGDIEAFQQAETPLGVKVVAVVMTLVGAALVGLIYGLVTDKLV SSRFGLGRAARMPKADHVVIAGLGRLSYLVLQLLRQMGYEVVVVEPDSDNPLVEAAEREGAVVIRGNYALASTLQQARIQ SSRCLICTTPDDLTNLETALTAHSLQPGIRTILRVTDPQVAARMQRHLQTLGTSYSTTALGARAFATAALVGSVYGTLTW EGETLLVTLLEVSPSSPYLGLSLRQLAQDYDLAILLHHSRPGRPCVFPKIWQKEGETVLKRGDRLYVMGTVGSLIRLAQG RPLPPELYQVRLLECRNPYFEDEILSTLAFYARLPKTALKPLLRCLPAVVSPPLPRDKAIKLARQLRKMSTEVQVFAQVQ SGERRILEVL >Mature_730_residues MVGSPSQGPDEQLQDNGRDPGAFLLVCGYNDLAALTLQILEDFGQRAVVVAPGPRPSLLKEPWQYVEGDPHQPEVLRRAG IERIKVALLLEDNDQANFELALLIRDLNPQARIVSRLFNTGLARYLDSILPQHFSLSVAGLAAPAFALKAVSDEFVGYFE LPQLEAQPATLPPELADPLYLGAPQETTLWNVVELTIGYNSRLLHMPLAELEETFGARVLFHYPVDGLSDFSESRVFDDF DHEAELLEGDRILVICDPRSYLQLLERNGRRGSSRAQRWASGQAQDRRQQRRGKSFGRGLLSWLRRSLQGLLQVKPIVHT LTFTLGAMLVLGVINFRIIGKSVVDGLLLTIVVLTGGYGDIEAFQQAETPLGVKVVAVVMTLVGAALVGLIYGLVTDKLV SSRFGLGRAARMPKADHVVIAGLGRLSYLVLQLLRQMGYEVVVVEPDSDNPLVEAAEREGAVVIRGNYALASTLQQARIQ SSRCLICTTPDDLTNLETALTAHSLQPGIRTILRVTDPQVAARMQRHLQTLGTSYSTTALGARAFATAALVGSVYGTLTW EGETLLVTLLEVSPSSPYLGLSLRQLAQDYDLAILLHHSRPGRPCVFPKIWQKEGETVLKRGDRLYVMGTVGSLIRLAQG RPLPPELYQVRLLECRNPYFEDEILSTLAFYARLPKTALKPLLRCLPAVVSPPLPRDKAIKLARQLRKMSTEVQVFAQVQ SGERRILEVL
Specific function: May Play A Role In The Defense Against Osmotic Shock. [C]
COG id: COG1226
COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80482; Mature: 80482
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGSPSQGPDEQLQDNGRDPGAFLLVCGYNDLAALTLQILEDFGQRAVVVAPGPRPSLLK CCCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHH EPWQYVEGDPHQPEVLRRAGIERIKVALLLEDNDQANFELALLIRDLNPQARIVSRLFNT HHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHH GLARYLDSILPQHFSLSVAGLAAPAFALKAVSDEFVGYFELPQLEAQPATLPPELADPLY HHHHHHHHHCCHHHCEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHCCCCE LGAPQETTLWNVVELTIGYNSRLLHMPLAELEETFGARVLFHYPVDGLSDFSESRVFDDF ECCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCC DHEAELLEGDRILVICDPRSYLQLLERNGRRGSSRAQRWASGQAQDRRQQRRGKSFGRGL CCHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH LSWLRRSLQGLLQVKPIVHTLTFTLGAMLVLGVINFRIIGKSVVDGLLLTIVVLTGGYGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IEAFQQAETPLGVKVVAVVMTLVGAALVGLIYGLVTDKLVSSRFGLGRAARMPKADHVVI HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE AGLGRLSYLVLQLLRQMGYEVVVVEPDSDNPLVEAAEREGAVVIRGNYALASTLQQARIQ ECHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHC SSRCLICTTPDDLTNLETALTAHSLQPGIRTILRVTDPQVAARMQRHLQTLGTSYSTTAL CCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH GARAFATAALVGSVYGTLTWEGETLLVTLLEVSPSSPYLGLSLRQLAQDYDLAILLHHSR HHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCC PGRPCVFPKIWQKEGETVLKRGDRLYVMGTVGSLIRLAQGRPLPPELYQVRLLECRNPYF CCCCCCCHHHHHHCCHHHHHCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC EDEILSTLAFYARLPKTALKPLLRCLPAVVSPPLPRDKAIKLARQLRKMSTEVQVFAQVQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SGERRILEVL CCHHHHHHCC >Mature Secondary Structure MVGSPSQGPDEQLQDNGRDPGAFLLVCGYNDLAALTLQILEDFGQRAVVVAPGPRPSLLK CCCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHH EPWQYVEGDPHQPEVLRRAGIERIKVALLLEDNDQANFELALLIRDLNPQARIVSRLFNT HHHHHHCCCCCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHH GLARYLDSILPQHFSLSVAGLAAPAFALKAVSDEFVGYFELPQLEAQPATLPPELADPLY HHHHHHHHHCCHHHCEEHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHCCCCE LGAPQETTLWNVVELTIGYNSRLLHMPLAELEETFGARVLFHYPVDGLSDFSESRVFDDF ECCCCCCCCEEEEEEEECCCCCEEECCHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCC DHEAELLEGDRILVICDPRSYLQLLERNGRRGSSRAQRWASGQAQDRRQQRRGKSFGRGL CCHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH LSWLRRSLQGLLQVKPIVHTLTFTLGAMLVLGVINFRIIGKSVVDGLLLTIVVLTGGYGD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IEAFQQAETPLGVKVVAVVMTLVGAALVGLIYGLVTDKLVSSRFGLGRAARMPKADHVVI HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE AGLGRLSYLVLQLLRQMGYEVVVVEPDSDNPLVEAAEREGAVVIRGNYALASTLQQARIQ ECHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHC SSRCLICTTPDDLTNLETALTAHSLQPGIRTILRVTDPQVAARMQRHLQTLGTSYSTTAL CCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH GARAFATAALVGSVYGTLTWEGETLLVTLLEVSPSSPYLGLSLRQLAQDYDLAILLHHSR HHHHHHHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCC PGRPCVFPKIWQKEGETVLKRGDRLYVMGTVGSLIRLAQGRPLPPELYQVRLLECRNPYF CCCCCCCHHHHHHCCHHHHHCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC EDEILSTLAFYARLPKTALKPLLRCLPAVVSPPLPRDKAIKLARQLRKMSTEVQVFAQVQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SGERRILEVL CCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: K (I) [Periplasm] [C]
Specific reaction: K (I) [Periplasm] = K (I) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA