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The map label for this gene is cpcA-2

Identifier: 86606682

GI number: 86606682

Start: 2062221

End: 2062703

Strand: Reverse

Name: cpcA-2

Synonym: CYA_2042

Alternate gene names: 86606682

Gene position: 2062703-2062221 (Counterclockwise)

Preceding gene: 86606683

Following gene: 86606681

Centisome position: 70.33

GC content: 61.49

Gene sequence:

>483_bases
ATGCAAACCCCTATTGTCGATGCCATTGCTACCGCGGATAGCCAGGGGCGCTATCTGAGCAACAGCGAGTTGCAGGCCAT
CAACGGCCGTTTTCAGCGGGCTGCCGCCAGCATGGAAGCTGCCCGTGTCCTGAGCAGCCGTGCCGAAGAGCTGGTGCGCG
GCGCCACCGAGGCCGTCTATGCCAAGTTCCCCTATACCACTCAGCCTGGGGGACAATGCCACACCCAAGCGGGCAAAGAC
AAGTGCGCCCGCGACGTGCGCCACTACCTGCGCTACATCACCTACTGCTTGGTAGCCGGTGGCACCGGCCCGTTGGACGA
GTATCAGTTGGCCGGGATCCGCGAGATCAACGCCGCTTTTGAACTCTCCCCCAGTTGGTTTATCGAAGCGCTACGCTACA
TCAAAGCCAACCATGGCCTGACGGGGCAAGCGGCCACCGAAGCCAACACCTACATCGACTACGCCATCAACGCGCTCAGC
TAG

Upstream 100 bases:

>100_bases
TCCCTGAGAAGACAACCTTTTTTGCAGTCATTTTGCAGTTAAGCCGCTTTTGCAGTGTTGGATTTTTGCGTTGAGCTTAA
GTAAAGGAGCGTTTTGAATC

Downstream 100 bases:

>100_bases
GTTCTGCAGCTTGGGATCCCCCAAAAAGGTGGCCAGCCCGGCGCTTGAGGGGGATAGCGAAGAAAGGTTGTCGAGGGCAA
CGGTGGCGAGAAAGGGATCC

Product: phycocyanin, alpha subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MQTPIVDAIATADSQGRYLSNSELQAINGRFQRAAASMEAARVLSSRAEELVRGATEAVYAKFPYTTQPGGQCHTQAGKD
KCARDVRHYLRYITYCLVAGGTGPLDEYQLAGIREINAAFELSPSWFIEALRYIKANHGLTGQAATEANTYIDYAINALS

Sequences:

>Translated_160_residues
MQTPIVDAIATADSQGRYLSNSELQAINGRFQRAAASMEAARVLSSRAEELVRGATEAVYAKFPYTTQPGGQCHTQAGKD
KCARDVRHYLRYITYCLVAGGTGPLDEYQLAGIREINAAFELSPSWFIEALRYIKANHGLTGQAATEANTYIDYAINALS
>Mature_160_residues
MQTPIVDAIATADSQGRYLSNSELQAINGRFQRAAASMEAARVLSSRAEELVRGATEAVYAKFPYTTQPGGQCHTQAGKD
KCARDVRHYLRYITYCLVAGGTGPLDEYQLAGIREINAAFELSPSWFIEALRYIKANHGLTGQAATEANTYIDYAINALS

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17457; Mature: 17457

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTPIVDAIATADSQGRYLSNSELQAINGRFQRAAASMEAARVLSSRAEELVRGATEAVY
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKFPYTTQPGGQCHTQAGKDKCARDVRHYLRYITYCLVAGGTGPLDEYQLAGIREINAAF
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHH
ELSPSWFIEALRYIKANHGLTGQAATEANTYIDYAINALS
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MQTPIVDAIATADSQGRYLSNSELQAINGRFQRAAASMEAARVLSSRAEELVRGATEAVY
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKFPYTTQPGGQCHTQAGKDKCARDVRHYLRYITYCLVAGGTGPLDEYQLAGIREINAAF
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHH
ELSPSWFIEALRYIKANHGLTGQAATEANTYIDYAINALS
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]