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The map label for this gene is cpcC

Identifier: 86606681

GI number: 86606681

Start: 2061089

End: 2061946

Strand: Reverse

Name: cpcC

Synonym: CYA_2041

Alternate gene names: 86606681

Gene position: 2061946-2061089 (Counterclockwise)

Preceding gene: 86606682

Following gene: 86606680

Centisome position: 70.31

GC content: 62.24

Gene sequence:

>858_bases
ATGAGTGGAATCACAGCGGCAAGCCGAATGGGGATCCGGGGCATTACAGAGACGACTCCCTTAGAATTGCGCCCTAATGC
CAGCCAGGATCAGCTCAATGCGATCCTGCGGGCCATCTATCGCCAGGTGCTGGGCAACGATCACCTGTTTGGCGCAGACA
GGAAGGAGCTGGCCAGTGCGGAATCGCTGCTACGGCGGGGCAGCCTGACGGTGCGGGAGTTTGTGCGCTTAATCGCCAAG
TCCGAAGCCTACAAGAGGCGGTTTTTGTACCCTAACTCCCAGACCCGCGCCATCGAGCTCAACTTCAAGCACCTGCTGGG
GCGAGCTCCCACCAGCCCTAAGGATATTGCCCGACACCTGGACATCTACCACGCTGGGGGCCACAGCGCGGAGATCGATT
CCTACATCGACAGCCCAGAATACCTGGAAGCCTTTGGCGACAACATCGTCCCCTATCCGCGCGGGTTTGAATATCGCAAG
GCCCATACCACCCGCGACTTCACCAACCTTTTTGCCCTCTACGGGGGCTACGCCAACAACGACCGTTCCCAGGGGCGCAG
GCCGCGCTTGATGGTACCCCTCGCCACCGGCTTTACCCCGGCCATCCGCCGCATCGGGGTGCGGGGGCTGCTGCCCCCCA
GCCCCATTACCAAACACTTGGGGCCGCCAACGGGCCAGTCCGATCGCATGTTCTGCATTGAGGTGACGCGGCTGCTTAAC
CCGCCCTCGGCCCTGGCCACCTCCAGCCGGGTGCGCAAATCCAACCAGCAGATCTTTGTCTCTGCCGATCAGCTCTCGGC
GACGATGCAGCGGCTGCTCAAGTCGGGCGCCAAGATCGTCAGCGTCCGCAGCGCTTGA

Upstream 100 bases:

>100_bases
TTTGTGCTGCTGAGGGTTGTTGAGTTGAGAGGTGAACCCAAGCAGCCTTTTCAAGCTTTTTTCAAAGTTAATCCAGCCAG
TTTCATCATGAGGAATTAAC

Downstream 100 bases:

>100_bases
GGCCTCTGCAGGCGCTCTGGCCTGTTGATGCTATGACCACGGCTGTTCCTTCAGATCTCCCTCCGGCCGCCGACCTCACC
CCCGCTGGCCAGATCGCCAA

Product: phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSGITAASRMGIRGITETTPLELRPNASQDQLNAILRAIYRQVLGNDHLFGADRKELASAESLLRRGSLTVREFVRLIAK
SEAYKRRFLYPNSQTRAIELNFKHLLGRAPTSPKDIARHLDIYHAGGHSAEIDSYIDSPEYLEAFGDNIVPYPRGFEYRK
AHTTRDFTNLFALYGGYANNDRSQGRRPRLMVPLATGFTPAIRRIGVRGLLPPSPITKHLGPPTGQSDRMFCIEVTRLLN
PPSALATSSRVRKSNQQIFVSADQLSATMQRLLKSGAKIVSVRSA

Sequences:

>Translated_285_residues
MSGITAASRMGIRGITETTPLELRPNASQDQLNAILRAIYRQVLGNDHLFGADRKELASAESLLRRGSLTVREFVRLIAK
SEAYKRRFLYPNSQTRAIELNFKHLLGRAPTSPKDIARHLDIYHAGGHSAEIDSYIDSPEYLEAFGDNIVPYPRGFEYRK
AHTTRDFTNLFALYGGYANNDRSQGRRPRLMVPLATGFTPAIRRIGVRGLLPPSPITKHLGPPTGQSDRMFCIEVTRLLN
PPSALATSSRVRKSNQQIFVSADQLSATMQRLLKSGAKIVSVRSA
>Mature_284_residues
SGITAASRMGIRGITETTPLELRPNASQDQLNAILRAIYRQVLGNDHLFGADRKELASAESLLRRGSLTVREFVRLIAKS
EAYKRRFLYPNSQTRAIELNFKHLLGRAPTSPKDIARHLDIYHAGGHSAEIDSYIDSPEYLEAFGDNIVPYPRGFEYRKA
HTTRDFTNLFALYGGYANNDRSQGRRPRLMVPLATGFTPAIRRIGVRGLLPPSPITKHLGPPTGQSDRMFCIEVTRLLNP
PSALATSSRVRKSNQQIFVSADQLSATMQRLLKSGAKIVSVRSA

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 31718; Mature: 31587

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGITAASRMGIRGITETTPLELRPNASQDQLNAILRAIYRQVLGNDHLFGADRKELASA
CCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
ESLLRRGSLTVREFVRLIAKSEAYKRRFLYPNSQTRAIELNFKHLLGRAPTSPKDIARHL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHH
DIYHAGGHSAEIDSYIDSPEYLEAFGDNIVPYPRGFEYRKAHTTRDFTNLFALYGGYANN
HHHCCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCC
DRSQGRRPRLMVPLATGFTPAIRRIGVRGLLPPSPITKHLGPPTGQSDRMFCIEVTRLLN
CCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCEEHEEHHHHCC
PPSALATSSRVRKSNQQIFVSADQLSATMQRLLKSGAKIVSVRSA
CCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure 
SGITAASRMGIRGITETTPLELRPNASQDQLNAILRAIYRQVLGNDHLFGADRKELASA
CCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
ESLLRRGSLTVREFVRLIAKSEAYKRRFLYPNSQTRAIELNFKHLLGRAPTSPKDIARHL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHH
DIYHAGGHSAEIDSYIDSPEYLEAFGDNIVPYPRGFEYRKAHTTRDFTNLFALYGGYANN
HHHCCCCCCCHHHHHCCCHHHHHHHCCCCCCCCCCCCHHHHHCHHHHHHHHHHHCCCCCC
DRSQGRRPRLMVPLATGFTPAIRRIGVRGLLPPSPITKHLGPPTGQSDRMFCIEVTRLLN
CCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCEEHEEHHHHCC
PPSALATSSRVRKSNQQIFVSADQLSATMQRLLKSGAKIVSVRSA
CCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3933528 [H]