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The map label for this gene is cpcB-2

Identifier: 86606683

GI number: 86606683

Start: 2062891

End: 2063409

Strand: Reverse

Name: cpcB-2

Synonym: CYA_2043

Alternate gene names: 86606683

Gene position: 2063409-2062891 (Counterclockwise)

Preceding gene: 86606686

Following gene: 86606682

Centisome position: 70.36

GC content: 58.19

Gene sequence:

>519_bases
ATGAACGATGTATTTGGCAAAGTTGTTGCGCAAGCTGATTCCAAAGGCGCTTTCTTGGGAGAAAACGAGTTTGCGGCTCT
GCAGCAGGTGATTGCCGAGGGGAACAAGCGCTTGGACGCCGTGAACCGCCTCACCAGCAACGCTTCTAAAATTGTGACCG
ATGCCATCCGTCAGTTGTTTGCCGAGGAGCCCAATTTGAACGCTCCCGGCGGCCCTGCTTATCCCAGCCGCAACGTGGCC
GCCTGTATGCGGGATATGGATATCATCCTCCGCTACATCACCTATGCGGTGGCAGCCGCTGACCCCAGCGTGCTGGACGA
GCGCTGCTTGAACGGCTTGCGGGAAACCTATCAGGCGCTGGGCACCCCTGGCAGCTCTGTGGCCAACGGCATTCAAAAAA
TGAAAAAAGCTGCGGTGGCGGTGGTGAGCGATCCCAACGGCATCACCCGGGGTGATTGCAGCGCTTTGATCGCCGAAATC
GAGTCCTACTTCGATCGCGCCGCTGCTGCCGTGGTCTGA

Upstream 100 bases:

>100_bases
TCGGGGCATTGCTGCATTCCTGGCTGGCGGGAGCTTCCACTTCCGCGGCAGGGAGTGACGATTCATAACCTCTTTTGCTT
TCGCTAGGAGATTTAAAGCC

Downstream 100 bases:

>100_bases
TAGGGCCGGAATCTCCATCGCTTTGCCTGGAACAGTCGGATCCTAGGGTGAAGGCCGCCGTGGAGTTCAACTCGGGTTGG
CCTGGGATCCCTGAGAAGAC

Product: phycocyanin, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MNDVFGKVVAQADSKGAFLGENEFAALQQVIAEGNKRLDAVNRLTSNASKIVTDAIRQLFAEEPNLNAPGGPAYPSRNVA
ACMRDMDIILRYITYAVAAADPSVLDERCLNGLRETYQALGTPGSSVANGIQKMKKAAVAVVSDPNGITRGDCSALIAEI
ESYFDRAAAAVV

Sequences:

>Translated_172_residues
MNDVFGKVVAQADSKGAFLGENEFAALQQVIAEGNKRLDAVNRLTSNASKIVTDAIRQLFAEEPNLNAPGGPAYPSRNVA
ACMRDMDIILRYITYAVAAADPSVLDERCLNGLRETYQALGTPGSSVANGIQKMKKAAVAVVSDPNGITRGDCSALIAEI
ESYFDRAAAAVV
>Mature_172_residues
MNDVFGKVVAQADSKGAFLGENEFAALQQVIAEGNKRLDAVNRLTSNASKIVTDAIRQLFAEEPNLNAPGGPAYPSRNVA
ACMRDMDIILRYITYAVAAADPSVLDERCLNGLRETYQALGTPGSSVANGIQKMKKAAVAVVSDPNGITRGDCSALIAEI
ESYFDRAAAAVV

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006247 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18195; Mature: 18195

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDVFGKVVAQADSKGAFLGENEFAALQQVIAEGNKRLDAVNRLTSNASKIVTDAIRQLF
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEEPNLNAPGGPAYPSRNVAACMRDMDIILRYITYAVAAADPSVLDERCLNGLRETYQAL
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GTPGSSVANGIQKMKKAAVAVVSDPNGITRGDCSALIAEIESYFDRAAAAVV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDVFGKVVAQADSKGAFLGENEFAALQQVIAEGNKRLDAVNRLTSNASKIVTDAIRQLF
CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AEEPNLNAPGGPAYPSRNVAACMRDMDIILRYITYAVAAADPSVLDERCLNGLRETYQAL
HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GTPGSSVANGIQKMKKAAVAVVSDPNGITRGDCSALIAEIESYFDRAAAAVV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 103794; 3122783 [H]