| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is yhjX [H]
Identifier: 86606468
GI number: 86606468
Start: 1822540
End: 1823742
Strand: Reverse
Name: yhjX [H]
Synonym: CYA_1817
Alternate gene names: 86606468
Gene position: 1823742-1822540 (Counterclockwise)
Preceding gene: 86606469
Following gene: 86606466
Centisome position: 62.19
GC content: 58.6
Gene sequence:
>1203_bases ATGGGGAGATGGCTTTTTATCCTCCAGGGGCTCCTGGTTCTTCTTTGCCTGGGAACCGTCTATTCCTGGAGCATTTTCCG CAAGCCCCTGGAAACAGAGCTGGGGATTGGGGCCAGTGAGAGCCTGCTGCCCTACACCGTTGCCCTCGTGTTTTACGCTA CCCTCATGCCCATCACAGGGTTTGTCATCCCCCGCTGGGGATCCCGCCGAGTACTGGCTCTGGGGGGCAGCTTGGTGGGT TTGGGCTATGGGCTGGCCAGCTTCGCCCCTTCTATTGGGTGGATCACCCTCTGCTATGGGGTGATTGCCGGCAGCGGTGT GGGAATAGCCTATGGAGTGCCAATGGCCGTGGCAGCCCGTTGGTTCCCGGATCGCAAGGGATTGGCGGTGGGATCCACCA TTGTCGGCTTTGGCCTATCCCCCCTGCTTACCGCTCCTCTAGCCAACCGCTTGATCGAGGCGCTGGGGGTTCGACCTACG CTGCTGATTTTGGGGATCCTCTTCGCGGCAGTGATCCTGGGGATCGCAACCCAACTGAGATTTCCTCCTCCCGATTGGAT CCTTTCCTCACCTTTTCCAAGAAAATCCACGAATGGCCCAGATCGCTCTCCGTTGACTTCTCGGCGCTCTCTCCCTCTGC TGAGGAACCCCTCCTTCTATGGCCTGTGGATCTGCTATGCCATCGGCACTCTGATCGGTTTAAGCGCCATTGGGATTTCT GGTCCTGTGGGGGAAGAGCTGATCGGCCTGGATCCCACTGCGGCTGCCAACAGCGTGGCTCTCTTCGCCATTTTCAACGG GATCAGCCGTCCTCTGTTTGGCTGGTTGGCCGATCGCTTACATCCCCATCAGGTCACTACGGGCTCCTATGGGCTGATCC TGCTGGCCTGTGGGCTAATGCTCCTGCCTCCCCAGGGATCCCTTCTGGGCTATTGGGTAGCCTTTTCCTTGCTTTGGTTT TGCCTGGGGGGGTGGCTGGCCATGGCTCCCGCCCTGACCCTGCGCTTGTTTGATCCCGAACGCTACGCCCAGAACTACGG CATTGTGTTTACCGCCTATGGAGTTGGGGCCTTGGTGGGAACGATGATCGCGGGGCAAATTCGCGATAGGCTGGGCAGCT ATAGCTATACCTTTTATGGGATGGCCGCCTTGGCGGTGGTGGGGATCTGGGTGGCCAACGTTTTTTTGAAAGAGAAGTTG TAG
Upstream 100 bases:
>100_bases GAAAGGGCTGAGAGAATGGGTTGAACTCAGCTCCAACAAGCTCTAGATACCCATGAAAAGGGTTGGATTCCCCGTTACTT TGTATGGACAACCGGCCCAT
Downstream 100 bases:
>100_bases GAGCTTCAAGCCAGCGGGCACAGCAGGGATCCCATCAGCAGGGGCAGCAATCCCCTACTTCATACCCTCCACTGCAGGGC TGGGTGAACCAACTTAAAGA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVG LGYGLASFAPSIGWITLCYGVIAGSGVGIAYGVPMAVAARWFPDRKGLAVGSTIVGFGLSPLLTAPLANRLIEALGVRPT LLILGILFAAVILGIATQLRFPPPDWILSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS GPVGEELIGLDPTAAANSVALFAIFNGISRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLGYWVAFSLLWF CLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANVFLKEKL
Sequences:
>Translated_400_residues MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVG LGYGLASFAPSIGWITLCYGVIAGSGVGIAYGVPMAVAARWFPDRKGLAVGSTIVGFGLSPLLTAPLANRLIEALGVRPT LLILGILFAAVILGIATQLRFPPPDWILSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS GPVGEELIGLDPTAAANSVALFAIFNGISRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLGYWVAFSLLWF CLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANVFLKEKL >Mature_399_residues GRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITGFVIPRWGSRRVLALGGSLVGL GYGLASFAPSIGWITLCYGVIAGSGVGIAYGVPMAVAARWFPDRKGLAVGSTIVGFGLSPLLTAPLANRLIEALGVRPTL LILGILFAAVILGIATQLRFPPPDWILSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGISG PVGEELIGLDPTAAANSVALFAIFNGISRPLFGWLADRLHPHQVTTGSYGLILLACGLMLLPPQGSLLGYWVAFSLLWFC LGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVGTMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANVFLKEKL
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI291621700, Length=402, Percent_Identity=24.6268656716418, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI34916028, Length=162, Percent_Identity=30.2469135802469, Blast_Score=74, Evalue=2e-13, Organism=Escherichia coli, GI1789969, Length=377, Percent_Identity=27.0557029177719, Blast_Score=147, Evalue=1e-36, Organism=Drosophila melanogaster, GI281360217, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI28573971, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42790; Mature: 42659
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC FVIPRWGSRRVLALGGSLVGLGYGLASFAPSIGWITLCYGVIAGSGVGIAYGVPMAVAAR EEECCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHH WFPDRKGLAVGSTIVGFGLSPLLTAPLANRLIEALGVRPTLLILGILFAAVILGIATQLR HCCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC FPPPDWILSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC GPVGEELIGLDPTAAANSVALFAIFNGISRPLFGWLADRLHPHQVTTGSYGLILLACGLM CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LLPPQGSLLGYWVAFSLLWFCLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEEHHHHHHHH TMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANVFLKEKL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GRWLFILQGLLVLLCLGTVYSWSIFRKPLETELGIGASESLLPYTVALVFYATLMPITG CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC FVIPRWGSRRVLALGGSLVGLGYGLASFAPSIGWITLCYGVIAGSGVGIAYGVPMAVAAR EEECCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCHHHHHHH WFPDRKGLAVGSTIVGFGLSPLLTAPLANRLIEALGVRPTLLILGILFAAVILGIATQLR HCCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC FPPPDWILSSPFPRKSTNGPDRSPLTSRRSLPLLRNPSFYGLWICYAIGTLIGLSAIGIS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC GPVGEELIGLDPTAAANSVALFAIFNGISRPLFGWLADRLHPHQVTTGSYGLILLACGLM CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHH LLPPQGSLLGYWVAFSLLWFCLGGWLAMAPALTLRLFDPERYAQNYGIVFTAYGVGALVG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHCCCCEEEEEHHHHHHHH TMIAGQIRDRLGSYSYTFYGMAALAVVGIWVANVFLKEKL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]