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The map label for this gene is apcE [H]

Identifier: 86606466

GI number: 86606466

Start: 1817211

End: 1819907

Strand: Reverse

Name: apcE [H]

Synonym: CYA_1814

Alternate gene names: 86606466

Gene position: 1819907-1817211 (Counterclockwise)

Preceding gene: 86606468

Following gene: 86606460

Centisome position: 62.05

GC content: 61.03

Gene sequence:

>2697_bases
ATGGGTATCAACGTATCCGCTGGCGCAGTCGTTTCCAACCCCCGTCTCTACCAAACCGTGCCTGTATCGACCATCTCCCA
GGCGGAACAGCAGGATCGCTATCTGGGACGCACCGAGCTGGATCGCCTCGAGGACTTTTTCTCCAGCGGCCTGAAACGGC
TAGAGATTGCCGAGGTCATTGCGGCCAATTCGGAAATCATCGTCAGCCGGGCAGCCAACCGCATCTTCACAGGGGGCTCG
CCCATGGCCTATCTGGAGCGGCCAGAAGCGACCCAAGACGAGAAAGAAGCCTTCAAGCTGGGTACTGCCTTCTACGTGGA
ATCCACCGGCGGATTCATTGAGGCCATCCGCAACATCTTTAGCGCCAGCGGTGTGGAGATTCCCCCCAATTTCCGCCCCA
TCAACATCTCCCGCTACGGGGCTGCCAACATGCGCAAATCGCTGCGGGATCTGAGCTGGTTTTTGCGCTACGTCACCTAC
GCTTTGGTGGCCGGGGATCCCAGTATCATCGCCGTCAACACCCGCGGCCTGCGGGAGATCATCGAAAACGCCTGCTCCGC
CGAGGCCACCATTGTCGCCATTCAAGAGATGAAACGGGCGGCGGCTGGCTACTTCCGCAAAGATGCCGAAGCAGTTGCCA
TCATCAACCAATATTTCGATGTTTTGCTGAGCGAGTTCATCGCCCCCGCCCCTTCCGACAAGCTGCGGCAGCGCAATGCC
AGCACCGCCGACGGCCTGCCCCTGCAGGGGCTGCAGCTACCCCAGGTTTACAACTTGGCTGCCGAGAAAGTTCCCGTTTT
TGCCATGAAGCCGGGGCTGTCCAACGCCGAGAAGGAAGAAGTCATCAAGGCCGCCTACCGGCAGGTGTTTGAGCGGGACA
TCCGCCGCGCCTACGGCCTCAAGCTTTCCAACCTGGAGTCGAAGGTGAAAAACGGCGAGATCTCCATGAAGGAGTTCATT
CGCCGCCTGGGCAAATCGGAGCTCTACCGCAAGCAGTTTTACGAGCCTTACATTAACAGCCGCGTTGTCGAGCTGGCCTT
CCGCCACTTCCTGGGCCGGGCCCCTGAAACCCGCGAGGAAGTGCAGACCTACTTCTCCATCGTCTCCAGCAAGGGCCTGG
CCGGCCTGGTGGACGCCCTGGTGGACAGCCGCGAGTACGGGGACTACTTCGGCGAGGAGACGGTGCCCTACCTGCGCAAG
CTGGGGATAGAAGCCCAAACCAGCGCCAACTGGGGAGCCAAGTTCGACCTCTACACCTACGCTGCCCCGCGCCGCAAGGT
GCCCCAGTTCATTACCCTCTTTGCCCGCTACAACCGGCCTCTGCCGGATCAGCATGCCTATGGCTCCGGCAACGACCCGC
TGGAGATCCAATTTGGGGCCATCTTCCCCAAGGAAACCCGTTCCCTCAGCGCCCGCCCCGCCCCCTTCAACAAGGATGTC
AAGCGCATCCTCATCCGGCGCGGCTTTGCCCTCACCAACGCCCGCACCAATCCCAAGGCAGTGGGGGATCCCGGTAGCCT
TGGTCCCAAAGTCTTCAAGCTCACCCAAACCCCTGGCGATCGCAGCCGGCGGCTAGGGGTGCGGGCGGGGATTGTTGGCA
GCGAAGTCTCGACGCAAGCGGTGATCCGCGCCTGCTACCAGCAGGTGTACGGTTACATGCCCTACGAAGGCCAACGGCTA
ACCCGTTGGGAGATCAAGCTGGAGTCGGGGGAAATTCCTGTCAAAGAGTTTATTCGCCAACTGGCCAAGTCGGATCTCTT
CCGCAACAAGTACTGGTCCAGCTTGTATGTCTGCAAAGCCATCGAGTTTATCCACCGCAAGCTGCTGGGCCGACCCACCT
ACGGGCGCCAGGAGATGAACCGCCTATTTGACATCGCCTCCAAGCAAGGGTTCTACGCCGTCGTGGACGCCATCCTCGAC
AGCGAGGAGTACCAGCAGGTCTTCGGGGAAGATATCGTGCCCTATGAGCGCTACCTCACCCCCGGCGGCCTGGCGCTGCG
GCGGATGCGCCCCGGCTCCACCGACATGGCTGTTGCAACCAAGCCCATTCGCACCGACGAGGACATTCCGCTGTTTGTCA
AGTTGGGTCAGCCTCGGGATATGCCTTCCGGCGAGCTGGAAATCCAGCGGCGGGCCCAGCAGGGGGTGCCCAAGGTACGC
CAAGAGATCCCTGTCTTCAAGCTCACCAGCCTGGCCAACAAAGCGGAAGTCAACAACCTCATCCGCGCCGCCTACCGGCA
GGTCTTCGAGCGGGATATGGACATCTACAACATCAGCGCCGAGCTCAGTTCTGCCGAGTCCAAGCTGCGCAACGGCGAGA
TCACCGTCAAGGAGTTCATCGAGGCCCTGGGGTGTTCCGAGCTGTACCGCTCCGAGTTCTATGCCCCCTATCCCAACACC
AAGGTGATCGAGCTGGGCACCAAGCACTTCCTGGGCCGTGCTCCTCTCAACCAGCAGGAGATCCGCAAGTACAACCAGAT
CTTGGCCACCCAGGGGGTGAAAGCCTTTGTGCGCGCCCTGCTGAACACCCAGGAGTATCGCGATCTCTTCGGCGAGGACA
CGGTGCCCTATCGCCGCTTCCCCACCCTGCCGGCGGCCAACTTCCCCAACACGCAGGAGCTGTACGGTCGCCTTACCAAG
CAAAACCACGAGCTGGTAGTGCCCAGCTTCAGCCCTGTGGGCAATGACCGCAGCTAG

Upstream 100 bases:

>100_bases
TACTTGTCCGGTCGCGGGTCAGCCTCTTCATCCCCTTCGATGGCACTGTCCTCGGCCTTTGTCGGCAGTTTTTTCGATCA
AAACGGAGTTTAAGAGATCG

Downstream 100 bases:

>100_bases
ATATGGAGCTGATACATTCACGCTGAACTCTCCTGAACATGGTTCAGGAAAGAAGCGATCGCATCCTGCCTATCTCTGAG
CAGGAAGGCGGTATCCCGCA

Product: phycobilisome 120 kDa linker polypeptide, core

Products: NA

Alternate protein names: Anchor polypeptide; PBS-anchor protein; Phycobilisome linker polypeptide [H]

Number of amino acids: Translated: 898; Mature: 897

Protein sequence:

>898_residues
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS
PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY
ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSNLESKVKNGEISMKEFI
RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRK
LGIEAQTSANWGAKFDLYTYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
KRILIRRGFALTNARTNPKAVGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL
TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD
SEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVATKPIRTDEDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVR
QEIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNT
KVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTK
QNHELVVPSFSPVGNDRS

Sequences:

>Translated_898_residues
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGS
PMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY
ALVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSNLESKVKNGEISMKEFI
RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRK
LGIEAQTSANWGAKFDLYTYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
KRILIRRGFALTNARTNPKAVGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRL
TRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD
SEEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVATKPIRTDEDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVR
QEIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNT
KVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTK
QNHELVVPSFSPVGNDRS
>Mature_897_residues
GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVIAANSEIIVSRAANRIFTGGSP
MAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYA
LVAGDPSIIAVNTRGLREIIENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNAS
TADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLSNLESKVKNGEISMKEFIR
RLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFSIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKL
GIEAQTSANWGAKFDLYTYAAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDVK
RILIRRGFALTNARTNPKAVGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQAVIRACYQQVYGYMPYEGQRLT
RWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDS
EEYQQVFGEDIVPYERYLTPGGLALRRMRPGSTDMAVATKPIRTDEDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVRQ
EIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFIEALGCSELYRSEFYAPYPNTK
VIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ
NHELVVPSFSPVGNDRS

Specific function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PBS-linker domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR001297
- InterPro:   IPR012128
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 101436; Mature: 101305

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI
CCCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF
HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH
SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI
HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL
CCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KLSNLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE
CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VQTYFSIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGIEAQTSANWGAKFDLYTY
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEE
AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH
KRILIRRGFALTNARTNPKAVGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCHHHCCCCCHHHHHH
VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDSEEYQQVFGEDIVPYERYLT
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC
PGGLALRRMRPGSTDMAVATKPIRTDEDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVR
CCCHHHEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHH
QEIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHH
EALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRAL
HHHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNHELVVPSFSPVGNDRS
HCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure 
GINVSAGAVVSNPRLYQTVPVSTISQAEQQDRYLGRTELDRLEDFFSSGLKRLEIAEVI
CCCCCCCCEECCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AANSEIIVSRAANRIFTGGSPMAYLERPEATQDEKEAFKLGTAFYVESTGGFIEAIRNIF
HCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH
SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPSIIAVNTRGLREI
HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
IENACSAEATIVAIQEMKRAAAGYFRKDAEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA
HHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL
CCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KLSNLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE
CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VQTYFSIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGIEAQTSANWGAKFDLYTY
HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEE
AAPRRKVPQFITLFARYNRPLPDQHAYGSGNDPLEIQFGAIFPKETRSLSARPAPFNKDV
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHH
KRILIRRGFALTNARTNPKAVGDPGSLGPKVFKLTQTPGDRSRRLGVRAGIVGSEVSTQA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCHHHCCCCCHHHHHH
VIRACYQQVYGYMPYEGQRLTRWEIKLESGEIPVKEFIRQLAKSDLFRNKYWSSLYVCKA
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDSEEYQQVFGEDIVPYERYLT
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC
PGGLALRRMRPGSTDMAVATKPIRTDEDIPLFVKLGQPRDMPSGELEIQRRAQQGVPKVR
CCCHHHEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHHH
QEIPVFKLTSLANKAEVNNLIRAAYRQVFERDMDIYNISAELSSAESKLRNGEITVKEFI
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHH
EALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGVKAFVRAL
HHHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNHELVVPSFSPVGNDRS
HCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840; 8665889 [H]