| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606460
Identifier: 86606460
GI number: 86606460
Start: 1808788
End: 1809849
Strand: Reverse
Name: 86606460
Synonym: CYA_1807
Alternate gene names: NA
Gene position: 1809849-1808788 (Counterclockwise)
Preceding gene: 86606466
Following gene: 86606455
Centisome position: 61.71
GC content: 44.73
Gene sequence:
>1062_bases GTGGACATAGTCAACGGGATTATTGCCAACATTCAGTTGAGGCAGATCAACCTAAGACTAATTGACACTAGAGGTAAACT AAACACTGTCTTAGGCTTAACCAAATTCAATGCTGCTATTGGTCTAACTAACTTGGGTTTGTCTGCCGTAGACTTTGCAG TCGTTACCTCTAAACTCAATCAAATCGATTCTCGAATCCAAAGTCTTCAAGCATCCGTAGAAAGTCTTCGAGAATCCATA GATAGATCGCTTCTTGCCAAAGCTAAGTCTGCTATCGACGTTGCAGAAATAGCTTTGAAGATGTCTTCTTCGACCAACAG GAAGCGATTGGTAACCGAGGTCATTCAGCCTCTGCTTGAGGCTGAGCACTATTATCTAGCTGCGTGGGATTCCAATTGGA ACAAGAACGACGGCATTTTGGCTTGCGAGTACATCTTAATCCTATCTTTAGTCTATGTTACAGAGATTGAATGCTACCTG GAGATGGAGGAGCATGAGATAGCTCTGAAACGCCTGGCGGAGGCAAAGGAGATTCTAAGACCTCGTATTAGAAAGTATGT CGAGCTTTTGTTGACCACGAAACCTTCAGTATATCTTCACAAGGCTTACCAAGAAGGAGTTAGCCTATCAAGCGTCGTGG AGATTCTCAAGTATGTAAAGAGTGAATCGGATGTGGATAAGCTGTTTGACAAATATATACGACCAGATATTTTCAGCGCA CAAAGCATTGAATCCTATTTTGATAGTATGCCGACAAGATCTAAGAATGCTATCCTTGCCCTCATTGCCCCACGTTTGAT TGATCCAAGCTGGTGGACAGTCTTGGATGGCATAGTTTGGGATCCTCCTCGGAGAGAAGCTATCATCAGTCGAGCAAATC AGGTTATAGCGGCTGCCCAGTCCATGATCGAATTGGACAGGAGACTGGAAGGCTACAGATACGAAATCACTGAAATGACT CGGCTTGGCCTCAGCTACCAAGAGTGGCAAAGTCTGGTTTTGCCGCCAAAAAACTCGTCTGAGGATCCAGGCCCCAAAGT TTTACTGCTCCTGCCGGCTTAG
Upstream 100 bases:
>100_bases CGGCGTGGTGCGAGAAGTGGCCTCTAAGCGGGTGGTGGCCTGGCTGAGAGAAACTGGAGGCTTGACACTCGCAGATAGCA TTAGCAATTGCATCCCGGCA
Downstream 100 bases:
>100_bases GAAGCAGGATCAATGGGGGTAGAATCCGCCGCCCAAACCAAACAAGACGGCTAATATGCCAATACCGACAGCGATCCCAG CTGCTAGTTTCAGATCCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MDIVNGIIANIQLRQINLRLIDTRGKLNTVLGLTKFNAAIGLTNLGLSAVDFAVVTSKLNQIDSRIQSLQASVESLRESI DRSLLAKAKSAIDVAEIALKMSSSTNRKRLVTEVIQPLLEAEHYYLAAWDSNWNKNDGILACEYILILSLVYVTEIECYL EMEEHEIALKRLAEAKEILRPRIRKYVELLLTTKPSVYLHKAYQEGVSLSSVVEILKYVKSESDVDKLFDKYIRPDIFSA QSIESYFDSMPTRSKNAILALIAPRLIDPSWWTVLDGIVWDPPRREAIISRANQVIAAAQSMIELDRRLEGYRYEITEMT RLGLSYQEWQSLVLPPKNSSEDPGPKVLLLLPA
Sequences:
>Translated_353_residues MDIVNGIIANIQLRQINLRLIDTRGKLNTVLGLTKFNAAIGLTNLGLSAVDFAVVTSKLNQIDSRIQSLQASVESLRESI DRSLLAKAKSAIDVAEIALKMSSSTNRKRLVTEVIQPLLEAEHYYLAAWDSNWNKNDGILACEYILILSLVYVTEIECYL EMEEHEIALKRLAEAKEILRPRIRKYVELLLTTKPSVYLHKAYQEGVSLSSVVEILKYVKSESDVDKLFDKYIRPDIFSA QSIESYFDSMPTRSKNAILALIAPRLIDPSWWTVLDGIVWDPPRREAIISRANQVIAAAQSMIELDRRLEGYRYEITEMT RLGLSYQEWQSLVLPPKNSSEDPGPKVLLLLPA >Mature_353_residues MDIVNGIIANIQLRQINLRLIDTRGKLNTVLGLTKFNAAIGLTNLGLSAVDFAVVTSKLNQIDSRIQSLQASVESLRESI DRSLLAKAKSAIDVAEIALKMSSSTNRKRLVTEVIQPLLEAEHYYLAAWDSNWNKNDGILACEYILILSLVYVTEIECYL EMEEHEIALKRLAEAKEILRPRIRKYVELLLTTKPSVYLHKAYQEGVSLSSVVEILKYVKSESDVDKLFDKYIRPDIFSA QSIESYFDSMPTRSKNAILALIAPRLIDPSWWTVLDGIVWDPPRREAIISRANQVIAAAQSMIELDRRLEGYRYEITEMT RLGLSYQEWQSLVLPPKNSSEDPGPKVLLLLPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39950; Mature: 39950
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIVNGIIANIQLRQINLRLIDTRGKLNTVLGLTKFNAAIGLTNLGLSAVDFAVVTSKLN CCCHHHHHHCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH QIDSRIQSLQASVESLRESIDRSLLAKAKSAIDVAEIALKMSSSTNRKRLVTEVIQPLLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC AEHYYLAAWDSNWNKNDGILACEYILILSLVYVTEIECYLEMEEHEIALKRLAEAKEILR CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHH PRIRKYVELLLTTKPSVYLHKAYQEGVSLSSVVEILKYVKSESDVDKLFDKYIRPDIFSA HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH QSIESYFDSMPTRSKNAILALIAPRLIDPSWWTVLDGIVWDPPRREAIISRANQVIAAAQ HHHHHHHHCCCCCCCCCEEEEEHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SMIELDRRLEGYRYEITEMTRLGLSYQEWQSLVLPPKNSSEDPGPKVLLLLPA HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MDIVNGIIANIQLRQINLRLIDTRGKLNTVLGLTKFNAAIGLTNLGLSAVDFAVVTSKLN CCCHHHHHHCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH QIDSRIQSLQASVESLRESIDRSLLAKAKSAIDVAEIALKMSSSTNRKRLVTEVIQPLLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC AEHYYLAAWDSNWNKNDGILACEYILILSLVYVTEIECYLEMEEHEIALKRLAEAKEILR CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHH PRIRKYVELLLTTKPSVYLHKAYQEGVSLSSVVEILKYVKSESDVDKLFDKYIRPDIFSA HHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH QSIESYFDSMPTRSKNAILALIAPRLIDPSWWTVLDGIVWDPPRREAIISRANQVIAAAQ HHHHHHHHCCCCCCCCCEEEEEHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SMIELDRRLEGYRYEITEMTRLGLSYQEWQSLVLPPKNSSEDPGPKVLLLLPA HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA