| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is 86606247
Identifier: 86606247
GI number: 86606247
Start: 1593438
End: 1594466
Strand: Reverse
Name: 86606247
Synonym: CYA_1584
Alternate gene names: NA
Gene position: 1594466-1593438 (Counterclockwise)
Preceding gene: 86606250
Following gene: 86606246
Centisome position: 54.37
GC content: 57.82
Gene sequence:
>1029_bases ATGGCACGTTTAGAACTCTCCCGGCGGGACTTCTGCCTGCGTTCTGGGGCTTTTGTGGCTGGCCTGATGGGGAGCCGCTG GTTGGTTCGCGATGCCGCGGTGGCTCAAGGAACCAAGCTGAAGGTGGCCGGGGTTTATACGGTTCCCATTGAGCAGCAGT GGGTGAGCCGGATCCATAAAGCCTTGATGACCGCCCAGGAGCGGGGGGATATTGACTATACCTGGTCGGAGTCAGTTTCC AACACCGACTATCCACGGGTGCTGCGTCAGTATGCCGAGAGCGGCGTCCAACTGCTGGTGGGTGAGGTCTTTGGGGTGGA GCGGGAAGCGCGGGAGGTGGCCAAAGACTATCCCAAGGTCAGCTTTTTGATGGGGTCCAGCCTCAAGCCGGATCCTGCCC TGAGCAATTTTGCCGTGTTTGACAACTACATCCACGAGCCTTCCTATCTGACGGGAATGGTGGCCGGGGGGCTGACCCGC TCCAAAATTATCGGCATGGTGGGGGGCTATCCCATTCCAGAGGTGAACCGCCTCATGAATGCTTTTATGGCAGGGGCGAG GGAACTGCAGCCGGAGGTGAAGTTTTTGGTCACCTTTATCGGCAGTTGGTTTGATCCCCCCAAAGCCAAAGAGGCGGCTT TTGCCCAAATTGATGCCGGCGCAGATATCCTTTACGCGGAGCGGTTTGGGGTATCTGATGCCGCCAAAGAGAGGGGCGTT TTGGCCATCGGCAATGTGATCGATACCCAGCCGGACTACCCGGAAACGGTGGTGGTCAGCGCCCTGTGGCACATGGAACC CACCATCGACAGAGCCATTGCCGCGGTGAAGGCCGGAGAGTTTAAGGCAGAGGACTACGGGATCTACAGCATGATGAAAT ATGGGGGATCCAGCCTCTCCGACTGGGGAACCTTTGCCGACAAGGTTCCGGCTGAACTGAAAGCTAAGGTGATGCAGCGG CAGGCAGAGATTCTGGCAGGGTCTTTTGTTGTAGCCATCGATGACAGCGAACCCAAGTCCACCCTCTGA
Upstream 100 bases:
>100_bases CTCAAAAAATTGTATTTCAGGATACATATTTTCAGGGATCTCCCCCTTAGGATAAGCCGAGCAGTAACCCGATCTCGAAG TAACCTCAACAGAAGCGACT
Downstream 100 bases:
>100_bases AGCGCCTTTGGCCTTGAAGGTGGTGGGCATTACTAAGCGCTTTGGTGCTCTGCTGGCCAACGACCAGATTGATCTTGAGC TGCGGGCCGGGGAGATTCTG
Product: Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; ABC Transporter Periplasmic/Surface Lipoprotein; Outer Membrane Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; Basic Membrane Protein Family Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; ABC Transporter Periplasmic Protein/Surface Lipoprotein; Twin-Arginine Translocation Pathway Signal; Membrane Lipoprotein; Tat Pathway Signal Sequence/Basic Membrane Protein; Surface Lipoprotein; Signal Peptide Protein; ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MARLELSRRDFCLRSGAFVAGLMGSRWLVRDAAVAQGTKLKVAGVYTVPIEQQWVSRIHKALMTAQERGDIDYTWSESVS NTDYPRVLRQYAESGVQLLVGEVFGVEREAREVAKDYPKVSFLMGSSLKPDPALSNFAVFDNYIHEPSYLTGMVAGGLTR SKIIGMVGGYPIPEVNRLMNAFMAGARELQPEVKFLVTFIGSWFDPPKAKEAAFAQIDAGADILYAERFGVSDAAKERGV LAIGNVIDTQPDYPETVVVSALWHMEPTIDRAIAAVKAGEFKAEDYGIYSMMKYGGSSLSDWGTFADKVPAELKAKVMQR QAEILAGSFVVAIDDSEPKSTL
Sequences:
>Translated_342_residues MARLELSRRDFCLRSGAFVAGLMGSRWLVRDAAVAQGTKLKVAGVYTVPIEQQWVSRIHKALMTAQERGDIDYTWSESVS NTDYPRVLRQYAESGVQLLVGEVFGVEREAREVAKDYPKVSFLMGSSLKPDPALSNFAVFDNYIHEPSYLTGMVAGGLTR SKIIGMVGGYPIPEVNRLMNAFMAGARELQPEVKFLVTFIGSWFDPPKAKEAAFAQIDAGADILYAERFGVSDAAKERGV LAIGNVIDTQPDYPETVVVSALWHMEPTIDRAIAAVKAGEFKAEDYGIYSMMKYGGSSLSDWGTFADKVPAELKAKVMQR QAEILAGSFVVAIDDSEPKSTL >Mature_341_residues ARLELSRRDFCLRSGAFVAGLMGSRWLVRDAAVAQGTKLKVAGVYTVPIEQQWVSRIHKALMTAQERGDIDYTWSESVSN TDYPRVLRQYAESGVQLLVGEVFGVEREAREVAKDYPKVSFLMGSSLKPDPALSNFAVFDNYIHEPSYLTGMVAGGLTRS KIIGMVGGYPIPEVNRLMNAFMAGARELQPEVKFLVTFIGSWFDPPKAKEAAFAQIDAGADILYAERFGVSDAAKERGVL AIGNVIDTQPDYPETVVVSALWHMEPTIDRAIAAVKAGEFKAEDYGIYSMMKYGGSSLSDWGTFADKVPAELKAKVMQRQ AEILAGSFVVAIDDSEPKSTL
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37517; Mature: 37386
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: PS00324 ASPARTOKINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLELSRRDFCLRSGAFVAGLMGSRWLVRDAAVAQGTKLKVAGVYTVPIEQQWVSRIHK CCCCCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHH ALMTAQERGDIDYTWSESVSNTDYPRVLRQYAESGVQLLVGEVFGVEREAREVAKDYPKV HHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCE SFLMGSSLKPDPALSNFAVFDNYIHEPSYLTGMVAGGLTRSKIIGMVGGYPIPEVNRLMN EEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH AFMAGARELQPEVKFLVTFIGSWFDPPKAKEAAFAQIDAGADILYAERFGVSDAAKERGV HHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHCCCCHHHHHCCE LAIGNVIDTQPDYPETVVVSALWHMEPTIDRAIAAVKAGEFKAEDYGIYSMMKYGGSSLS EEECCHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCH DWGTFADKVPAELKAKVMQRQAEILAGSFVVAIDDSEPKSTL HHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC >Mature Secondary Structure ARLELSRRDFCLRSGAFVAGLMGSRWLVRDAAVAQGTKLKVAGVYTVPIEQQWVSRIHK CCCCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHH ALMTAQERGDIDYTWSESVSNTDYPRVLRQYAESGVQLLVGEVFGVEREAREVAKDYPKV HHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCE SFLMGSSLKPDPALSNFAVFDNYIHEPSYLTGMVAGGLTRSKIIGMVGGYPIPEVNRLMN EEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH AFMAGARELQPEVKFLVTFIGSWFDPPKAKEAAFAQIDAGADILYAERFGVSDAAKERGV HHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEHHHCCCCHHHHHCCE LAIGNVIDTQPDYPETVVVSALWHMEPTIDRAIAAVKAGEFKAEDYGIYSMMKYGGSSLS EEECCHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCH DWGTFADKVPAELKAKVMQRQAEILAGSFVVAIDDSEPKSTL HHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA