| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606250
Identifier: 86606250
GI number: 86606250
Start: 1597436
End: 1597876
Strand: Reverse
Name: 86606250
Synonym: CYA_1586
Alternate gene names: NA
Gene position: 1597876-1597436 (Counterclockwise)
Preceding gene: 86606251
Following gene: 86606247
Centisome position: 54.48
GC content: 60.54
Gene sequence:
>441_bases ATGAGCCAAGTTTGGAAGAAGGGGCTTCGCTCCCTCTGCTGGAGCCTGGGTTGTGCAGCTTTGGCGGCGCTCTTGCTGGG TTTTGGAGCCATCCCCCTGCAACTGAAGGATTTGCACCTCACCCCCTGCCCGGATACCCCCGAATACACCAACCTGGTTA CCAGCAACGGCAACCCCATACCGGCCAGGTGCCTATTCATTGAAGGCACGGTGGTCAACCGCTCCAGAAATACTGTGCTG AATGCGGATGTCTTCGGTCGCCTTTACGATGCCAACGGCAATGAGGTTCTGCCGGAGCGCACCCGCCTGGGAGCCATCGA GGAGGTTCCCCCCGGCGAAAGCCCCTTCTCCATTCGCATCTCCGTGCCCGTGACCAGCCCGCTGCCTCTGACTATGGAGC AGTTCAAAGCCAGCGGCTTCAGCGGCACCGTGCGCCGTTAA
Upstream 100 bases:
>100_bases GATCCCTGGGATCAGCGCTTGGACGGGATCCAGACCGAGGAGGGGTTTTACCGGGCGGGGGATCCCCTAGACTAGGGGAG ATGGGCCTTGGAGAAAAAAC
Downstream 100 bases:
>100_bases AGCTGGCGGGTGAAGTCCACCTGGGCCGGGCGCCCCGGCAAATGGAGCTGGGCAACCACCGGCGGGGTTTGGGCGATCAG CCGTCCCCGACGGAAAACGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MSQVWKKGLRSLCWSLGCAALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNRSRNTVL NADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR
Sequences:
>Translated_146_residues MSQVWKKGLRSLCWSLGCAALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNRSRNTVL NADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR >Mature_145_residues SQVWKKGLRSLCWSLGCAALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNRSRNTVLN ADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15823; Mature: 15692
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVWKKGLRSLCWSLGCAALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCC PARCLFIEGTVVNRSRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRI CEEEEEEECEEEECCCCEEECHHHCEEEECCCCCEECCCHHHCCCCCCCCCCCCCEEEEE SVPVTSPLPLTMEQFKASGFSGTVRR EECCCCCCCCCHHHHHCCCCCCCCCC >Mature Secondary Structure SQVWKKGLRSLCWSLGCAALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCC PARCLFIEGTVVNRSRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRI CEEEEEEECEEEECCCCEEECHHHCEEEECCCCCEECCCHHHCCCCCCCCCCCCCEEEEE SVPVTSPLPLTMEQFKASGFSGTVRR EECCCCCCCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA