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The map label for this gene is recO

Identifier: 86606064

GI number: 86606064

Start: 1400048

End: 1400953

Strand: Reverse

Name: recO

Synonym: CYA_1394

Alternate gene names: 86606064

Gene position: 1400953-1400048 (Counterclockwise)

Preceding gene: 86606065

Following gene: 86606063

Centisome position: 47.77

GC content: 63.13

Gene sequence:

>906_bases
ATGAGCGGGGTCACCTACCGGGTGACGGGTATTAACCTCAAAGCGATGCCGCTGGGGGAGGCGGATCGGATCATTACTAT
TTTGACCCGCGAGCAGGGCTTGATTCGGGCGGTGGCCAAGGGATCCCGTAAGCAGCTTTCCAAGTGGGGAGGGCGGATGG
AGCCCTTTGTTGTCAACGATCTGCTGGTGGCGCGGGGGCGTTGGTCGGCCCAAACGGATCCCTCGCAGTGTCTCCAGCGC
ATCGCCCAGGCAGAAACCCTGCAGAGTTTTCCCCGTCTTGGCCGCAGCCTGGCCCATCTGACGGCGGCGCAGTACTTGGC
AGAGGTGGCCCTGCTTTTGGCCCTGCCCAACCAGCCCCAGGAAGAGCTGTTTGTGCTGCTGGTGGAGCATCTGGAGCGCA
TCGAGCAGGCCCCTGCGACAGAGGCCGTTTTGCCGCTCCTTGTCCATGGGCTCTACCACCTTTTAGTGGTGGGGGGGGTT
GCCCCCTCAGTACAAGCCTGCTACTCCTGTGGGGAGGAGTTAGCAGGTGAGGCTTTCTTCTCTCCCCACGCGGGTGGCCT
GGTCTGCGATCCTTGTCGGCTGGCGCAGCGGCTCAGCCCAGTTGCCTGGGTCTCCAGTTCTGTCCTGCAGGCCTTAGGAT
CCCTGCCCAACCCGACCTTGCCCTCGCTGGCCGAGCGTGCGCTGCCTCTGGCGAGTTGGCTGGCGGCAGAACGTCTGTTG
CGGCGGGTTTTGGAGCTGCATGCCGACCGCGCAATCCGTTCCGCTGGCCTGCTGGCCAGTTGCTACTCTGTCCCTGTTGC
CGAAACCCTCCCTCCTACCCCCAGTGGCCAGGGATCCCCAGTGGCGGCAGCAGCTTTTTCTGAGGAGGATTCCGAAACGC
TTGGCAGCAACCTGAAGAAGTTGTGA

Upstream 100 bases:

>100_bases
CGCAGGCGGAGGCGATGATCGCCGCGGGGGCGAGCCGCATCGGCACCTCCTGGGGGCTGGAGCTGATGCGAGAGCTGGAG
GCTAGAGGAGCCGGCGGCCC

Downstream 100 bases:

>100_bases
AGGTATGTATCAAGTCGAGCAAAATAGCTGCACAATAAAGGGTTAAGGCGGGTTAGCAGCCGCTTCTGGATGATAAATTG
GGTGGTAGAAAGTAACCTCT

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSGVTYRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVNDLLVARGRWSAQTDPSQCLQR
IAQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQEELFVLLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGV
APSVQACYSCGEELAGEAFFSPHAGGLVCDPCRLAQRLSPVAWVSSSVLQALGSLPNPTLPSLAERALPLASWLAAERLL
RRVLELHADRAIRSAGLLASCYSVPVAETLPPTPSGQGSPVAAAAFSEEDSETLGSNLKKL

Sequences:

>Translated_301_residues
MSGVTYRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVNDLLVARGRWSAQTDPSQCLQR
IAQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQEELFVLLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGV
APSVQACYSCGEELAGEAFFSPHAGGLVCDPCRLAQRLSPVAWVSSSVLQALGSLPNPTLPSLAERALPLASWLAAERLL
RRVLELHADRAIRSAGLLASCYSVPVAETLPPTPSGQGSPVAAAAFSEEDSETLGSNLKKL
>Mature_300_residues
SGVTYRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVNDLLVARGRWSAQTDPSQCLQRI
AQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQEELFVLLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGVA
PSVQACYSCGEELAGEAFFSPHAGGLVCDPCRLAQRLSPVAWVSSSVLQALGSLPNPTLPSLAERALPLASWLAAERLLR
RVLELHADRAIRSAGLLASCYSVPVAETLPPTPSGQGSPVAAAAFSEEDSETLGSNLKKL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_SYNJA (Q2JQL5)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474827.1
- STRING:   Q2JQL5
- GeneID:   3899830
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1394
- TIGR:   CYA_1394
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   TREQGLI
- ProtClustDB:   PRK00085
- BioCyc:   SSP321327:CYA_1394-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 32215; Mature: 32083

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVTYRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVND
CCCCEEEEECCEEEECCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHCCCCCCHHHHH
LLVARGRWSAQTDPSQCLQRIAQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EELFVLLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGVAPSVQACYSCGEELAGEAFF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHC
SPHAGGLVCDPCRLAQRLSPVAWVSSSVLQALGSLPNPTLPSLAERALPLASWLAAERLL
CCCCCCEEECHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RRVLELHADRAIRSAGLLASCYSVPVAETLPPTPSGQGSPVAAAAFSEEDSETLGSNLKK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEHHHHCCCHHHHHHHHHHC
L
C
>Mature Secondary Structure 
SGVTYRVTGINLKAMPLGEADRIITILTREQGLIRAVAKGSRKQLSKWGGRMEPFVVND
CCCEEEEECCEEEECCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHCCCCCCHHHHH
LLVARGRWSAQTDPSQCLQRIAQAETLQSFPRLGRSLAHLTAAQYLAEVALLLALPNQPQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EELFVLLVEHLERIEQAPATEAVLPLLVHGLYHLLVVGGVAPSVQACYSCGEELAGEAFF
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHC
SPHAGGLVCDPCRLAQRLSPVAWVSSSVLQALGSLPNPTLPSLAERALPLASWLAAERLL
CCCCCCEEECHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RRVLELHADRAIRSAGLLASCYSVPVAETLPPTPSGQGSPVAAAAFSEEDSETLGSNLKK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEHHHHCCCHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA