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The map label for this gene is deoC

Identifier: 86606065

GI number: 86606065

Start: 1400950

End: 1401651

Strand: Reverse

Name: deoC

Synonym: CYA_1395

Alternate gene names: 86606065

Gene position: 1401651-1400950 (Counterclockwise)

Preceding gene: 86606068

Following gene: 86606064

Centisome position: 47.79

GC content: 64.25

Gene sequence:

>702_bases
ATGCTCTCTCTGGAGCCCAAGGGCCTGGCAGACGGCCCGATCAACTTGGCGGAGTACATCGACCATACCCTGCTGCTGCC
GATGGTGACCCCAGAGGAGATTGACCAGGGGTGTGAAATTGCTCTGCGCTATGGCTTCCCCACCTTTTGTGTGCCTCCGT
GCTACGTGCCGCGGGTGGTTGAGCGGCTGCACGGGTCGCCAGTACGGGTGAGCACAGTGGTGGGGTTTCCCCTGGGCACC
AACACGGCGGAGGTCAAGCTCTACGAAGCTCAACTGGCGGTGGAGCAGGGGTGCCGGGAGCTGGATGTCCGCATCAACTT
GGCCTGGCTCAAGGCGGGGGAGCTGGATCGCCTCCATGCCGAGATTGCCCAACTGGTGGAAGAAACGGGGGTTTGCGTCA
AGGCCATTTTGGAAACTGCCCAGCTCACTGACGAGGAAAAAAAGCTGGCCGCCGAGATCTGCATGGACGCGGGAGTTGCC
TTCTTGATGACCTCCACCGGCTGGATGGGAGGGGCGACACCGGCCGATGTGCAACTGCTGTGGCAGCTTAGCCGCGGCAG
GGTGGGAGTCAAAGCTTCCGGCGGCATCCGCACCGTGGCGCAGGCGGAGGCGATGATCGCCGCGGGGGCGAGCCGCATCG
GCACCTCCTGGGGGCTGGAGCTGATGCGAGAGCTGGAGGCTAGAGGAGCCGGCGGCCCATGA

Upstream 100 bases:

>100_bases
ATTGGCTGAAATCTCAGGGGTAGGGGGGATTGGCTGCTGCGGCTGCTCTCCGGGATCCTTGGGGCTAAAGTAGAGGTAGT
GCTGTGGGATCTGGCAACTG

Downstream 100 bases:

>100_bases
GCGGGGTCACCTACCGGGTGACGGGTATTAACCTCAAAGCGATGCCGCTGGGGGAGGCGGATCGGATCATTACTATTTTG
ACCCGCGAGCAGGGCTTGAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MLSLEPKGLADGPINLAEYIDHTLLLPMVTPEEIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVRVSTVVGFPLGT
NTAEVKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETAQLTDEEKKLAAEICMDAGVA
FLMTSTGWMGGATPADVQLLWQLSRGRVGVKASGGIRTVAQAEAMIAAGASRIGTSWGLELMRELEARGAGGP

Sequences:

>Translated_233_residues
MLSLEPKGLADGPINLAEYIDHTLLLPMVTPEEIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVRVSTVVGFPLGT
NTAEVKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETAQLTDEEKKLAAEICMDAGVA
FLMTSTGWMGGATPADVQLLWQLSRGRVGVKASGGIRTVAQAEAMIAAGASRIGTSWGLELMRELEARGAGGP
>Mature_233_residues
MLSLEPKGLADGPINLAEYIDHTLLLPMVTPEEIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVRVSTVVGFPLGT
NTAEVKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETAQLTDEEKKLAAEICMDAGVA
FLMTSTGWMGGATPADVQLLWQLSRGRVGVKASGGIRTVAQAEAMIAAGASRIGTSWGLELMRELEARGAGGP

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=182, Percent_Identity=31.3186813186813, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1790841, Length=182, Percent_Identity=31.3186813186813, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24971; Mature: 24971

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLEPKGLADGPINLAEYIDHTLLLPMVTPEEIDQGCEIALRYGFPTFCVPPCYVPRVV
CCCCCCCCCCCCCCCHHHHHCHHEEECCCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHH
ERLHGSPVRVSTVVGFPLGTNTAEVKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHA
HHHCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHHCCCEECEEEEEEEECCCCHHHHHH
EIAQLVEETGVCVKAILETAQLTDEEKKLAAEICMDAGVAFLMTSTGWMGGATPADVQLL
HHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHH
WQLSRGRVGVKASGGIRTVAQAEAMIAAGASRIGTSWGLELMRELEARGAGGP
HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLSLEPKGLADGPINLAEYIDHTLLLPMVTPEEIDQGCEIALRYGFPTFCVPPCYVPRVV
CCCCCCCCCCCCCCCHHHHHCHHEEECCCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHH
ERLHGSPVRVSTVVGFPLGTNTAEVKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHA
HHHCCCCEEEEEEEECCCCCCCEEEEEHHHHHHHHHCCCEECEEEEEEEECCCCHHHHHH
EIAQLVEETGVCVKAILETAQLTDEEKKLAAEICMDAGVAFLMTSTGWMGGATPADVQLL
HHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHEEEECCCCCCCCCCHHHHHH
WQLSRGRVGVKASGGIRTVAQAEAMIAAGASRIGTSWGLELMRELEARGAGGP
HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA