| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606008
Identifier: 86606008
GI number: 86606008
Start: 1346103
End: 1347674
Strand: Reverse
Name: 86606008
Synonym: CYA_1332
Alternate gene names: NA
Gene position: 1347674-1346103 (Counterclockwise)
Preceding gene: 86606009
Following gene: 86606007
Centisome position: 45.95
GC content: 59.41
Gene sequence:
>1572_bases ATGGCCGATGCCCACCTGCCGCCGCTAATCCAAGCGATGTTGGATCCGGGGTTTTACCCCCATCCGGTGCGGGAGCCGAT TCAGCTCGTCCAAACCCACATTTCCTACATTTTCTTGACAGGGAACTACGCCTATAAGGTGAAGAAGCCTCTGGATTTTG GCTTTTTGAATTTCACCACCCTGGAGCGGCGACGCTACTTTTGTCAAGAAGAGCTGCGCCTGAACCAGCGCGGAGCGCCA GGGCTTTATCTACAGGTGTTGCCCATTGTGCAAGCCGAGGGCCGGTTTCAGCTTGACGGCAGTGGCGAGCCCGTGGAGTA CACCCTCAAAATGCGGCAGTTTCCTCAAGAGCAACTCTTTAGCAACCTCCTCGAGCGGGGGGAGCTGACGCCACTCTTAA TGGAGGAGCTAGGACGGGTGGTGGCGGCCTTTCACGCCCAGGCGGAGACCAACGACTACATCCGCAGCTTTGGCCGGCCA GAGCAGGTGCGGCAGGCTTTCGACGAGAATTACGCCCAAACCCAGCGCTACATTGGCGGCCCTCAGACGGCAGATCAATA TCGGGAGACCCAAGCCTACACGGATCGCTTTTTTGCCGAGCGACAGGAGCTGTTTTACCAGAGAATTGAGCAAGACCGCA TCCGCGAAGGCCACGGGGATCTGCATCTTGGCAACCTCTGTTGGTGGGAAGGCCAGATCTTGCTGTTTGATTGCATTGAG TTCAACGAGGCCTTCCGCTTTGTGGATACGATGTACGACGTATCCTATGCAGTGATGGATCTGGATGCCCGCCATCGCCC CGATCTGGGCAACGCCTATTTGAACAGCTATCTGGAAGAGACAGGCGATTGGGAAGGACTCAAGATCTTGCCCATTTACC TCAATCGCCAGGCCTACGTGCGGGCCAAGGTCACCTCTTTTTTGCTAGACGATCCTGCCGCCTCGGAAGCTGCCAAAGCC AATGCCTTCCACACTGCCGCCCGCTACTACCGACTGGCCTGGGAATACACGCTGCCCAAACAGGGGCAGTTGTTTCTGAT GGCCGGCCTGTCGGGAGCGGGCAAAAGCACGGTGGCCCGCCACCTGGCCCGACAGCGAGGGGCCATCCACATCCGCTCCG ACGCCGTGCGCAAGCATTTGGCTGGGATCCCTCTGCGGCAGCGAGGGGGGCCAGAGGTGTATACGCCCGAGATGACCGAC AGGACTTATCGCCGCCTGGTGCAATTGGGAGTGGAGTTGGCCCGGGAAGGTTACAGCGTGATTCTGGACGCCAAGTTTGA CCGGCAAGCGCTGCGGGGCATGGCAATTGAACAAGCCCAACGGTGCCGGATCCCGTTGTGCATCCTCTACTGCCACGCCC CTGAACCTGTCCTCCGCGAGCGGCTGCAACGGCGAACGCTCCCTGCTTCGAGCCTGGGTGAGCCGCTGAACCTCGCCGAC ATTGCCGATGCCACCGCCGATCTCCTTGCCCAGCAGCAGGCGCAGTGGCAGGATTTTTCCGAGGGGGAGCGGCGCTTGCT GCAGGTTTTGGATACCAGCCAAGATTGGCAAGCGCAACTGCAGCAGATCTAG
Upstream 100 bases:
>100_bases ATCCGTCTTTCACCGCAAGCGGCCGCCCTGCCCTTGGGAGACTAAGCTGAGGGCAATTTGGAGGAAAATGGGGATCCCTG ACTTTTCCGTCTCCATCTTT
Downstream 100 bases:
>100_bases GTCTCGACTCCAACTGACCAAGGTTACCGGCAAAGCGCATGCTGCCGTTTCCGGGTTAGAGGCTGACCGCAGCCCCTGCT GATCTCAGGCGGCGGTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAP GLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRP EQVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKA NAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTD RTYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI
Sequences:
>Translated_523_residues MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAP GLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRP EQVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKA NAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTD RTYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI >Mature_522_residues ADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTTLERRRYFCQEELRLNQRGAPG LYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLFSNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPE QVRQAFDENYAQTQRYIGGPQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIEF NEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYVRAKVTSFLLDDPAASEAAKAN AFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVARHLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDR TYRRLVQLGVELAREGYSVILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLADI ADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 60292; Mature: 60161
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTT CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCHHH LERRRYFCQEELRLNQRGAPGLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLF HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCCCCCEEEHHHHHCCHHHHH SNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPEQVRQAFDENYAQTQRYIGG HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC PQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCEEEEEHHH FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYV HHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHH RAKVTSFLLDDPAASEAAKANAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVAR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCHHHHHH HLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDRTYRRLVQLGVELAREGYSV HHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE ILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCCCCCHHH IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCC >Mature Secondary Structure ADAHLPPLIQAMLDPGFYPHPVREPIQLVQTHISYIFLTGNYAYKVKKPLDFGFLNFTT CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCCCHHH LERRRYFCQEELRLNQRGAPGLYLQVLPIVQAEGRFQLDGSGEPVEYTLKMRQFPQEQLF HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCEEEECCCCCCCEEEHHHHHCCHHHHH SNLLERGELTPLLMEELGRVVAAFHAQAETNDYIRSFGRPEQVRQAFDENYAQTQRYIGG HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC PQTADQYRETQAYTDRFFAERQELFYQRIEQDRIREGHGDLHLGNLCWWEGQILLFDCIE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCEEEEEHHH FNEAFRFVDTMYDVSYAVMDLDARHRPDLGNAYLNSYLEETGDWEGLKILPIYLNRQAYV HHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCHHH RAKVTSFLLDDPAASEAAKANAFHTAARYYRLAWEYTLPKQGQLFLMAGLSGAGKSTVAR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCHHHHHH HLARQRGAIHIRSDAVRKHLAGIPLRQRGGPEVYTPEMTDRTYRRLVQLGVELAREGYSV HHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE ILDAKFDRQALRGMAIEQAQRCRIPLCILYCHAPEPVLRERLQRRTLPASSLGEPLNLAD EEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCCCCCHHH IADATADLLAQQQAQWQDFSEGERRLLQVLDTSQDWQAQLQQI HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]