Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86605769

Identifier: 86605769

GI number: 86605769

Start: 1091762

End: 1094227

Strand: Reverse

Name: 86605769

Synonym: CYA_1074

Alternate gene names: NA

Gene position: 1094227-1091762 (Counterclockwise)

Preceding gene: 86605770

Following gene: 86605768

Centisome position: 37.31

GC content: 63.79

Gene sequence:

>2466_bases
ATGAGAAACCCCCTCACGTCCCCAGTGCAGCGCTGGAGCCGGCGACCTCAGGCAGCCTCTTCTCGAAAAGCCCAGCCCCC
CCTTTCCGAGCGGGTTGTCGGCTACGCCCTAGCGCTTCTCTCCCTCACTGCCGTCCACGGGATCCGCTACTACAACGAGC
CGCAACTGACCGTTGGCAGCCGCTCCCCGCAAACGTTTCTCGCCCCTGCAGCGGCAGAGATCGAGGACGTGGAGGCCACC
CAGGCCCGGCAAGCCGAGGCGCGACGGCGGGTGGTACAGGCCCTCAAAATCAACAGCGCCGCCAACGAGAGCATGCGGCA
AAATCTGGAGGCCCTCCTGGCCGCAGTGGAGGCGATTCGGCAAGAGGCCGGCCCTCTGCCCTACGTTTCCGTTCAGTTGC
TCTCCCTGCCTACTCAGATCTATCTGCGCCAACTGCCACCCGAAGAATGGGAGGCCTTACAGGCGGCAGTGCGGGAAACG
GCCATCGGCACCCCCTCGACCGCTCCGCCTTTTCCGGCACAAAGGCGTCCGGAGCAGCTTCCCCCCGACCAGCGGGCCAG
GCAAGAGCTGGTCCAGGTTTGGCAGCGGGCCTGGTTGGATGGAGCGGCCACTCAGACGGCGGCGACGGATCCCTATACCC
AGCTAATTGCCCAGGTGGAGGCGGCACAGCAGCGCTACCAAGGGGCTTTGCCGTCTCTGGAACAGCTCACCCCCCCTGTC
CCGGCCACGGTTCTCAACTTGACGGAGGCCGACTGGCAACATTTGCAAAACTTGAGCCGGCGGGTCTTGGAGCGCCTGCA
GAAGATAGGCATTGTGGATGGCCTGCCCCGCGAGGTGCGCGCCGAAGGGATCCAAGCCCAACTGGACGATCTGGCCTTTC
CGGGCAGTGCCGCCCAGCGGCGGGAGCTGCAGGGGCTGGTTTATCAGTGGCTGCAGCAGGTGCTGATCCCCAATCTGGAG
GTGGATCCGCAGCGCACCGAGCAGCGCATTCGCGCCGAGCTGGAAAAAGTTGAGCCCGTCCTGATCTCGGTTGCCGAGAA
CCAGGTAATTGTGCGAGTGGATCAGGTCATCACCCCCGAGATCTTTTTGATTTTGGATCACTTTGGTTTTACCCAGCGCC
GGATCAACATCTGGGGCCTGGTGGGGGTAGCTGGCGTCATGGGCTTGGGCCTGGCTGTCTTCGTGCCTTTGCAGCAACGC
TTGCAGCCGGGATTGCGCCGCCGGGATCGGGTGTTGATCCTGATGGTTTCCCTGACTGCTCCCCTGTTGGCGGCCTTGTT
CAAGCTGGAGTTCAGCTCTTTGCCGGCGGTGGGGCTGTTGCTGGGCAGTTTTTACGGGGCTGGGCTGGGCCTGGTGGTAG
TGGTGGGCCAGGCGTTGTTTTTGCCCTTGGTCTCTGCTGCCAACCTACTCACCTTTGTGCCCTTACTTTCCGGCAGTGTG
GTGGCCTGCGCCCTGGCCGGGCGCTCGCGTTCCCGCGAAGAGCTGGCCCTGCTGGGAGGAGGGGCGGCGGCAGTGCAGAT
GCTCACCTATGCGGCTGCTAGCTTGACCACAACGGGCGGCATCGACCTATTGGCGATGGCCTTGGGGGGAGGGATCACGC
TGGGGTGGAGCATTGTGGCCCTGGGGGCCAGCCCCTACCTGGAGCGCCTGTTCGACCTGGCCACCCCCATTCGCCTCATC
GAGTTGAGCAACCCCAACCGCACCTTGCTGCGGCGGCTGGCGGCAGAGGCCCCTGGCACCTTTCAGCACACCCTGTTTGT
GGCCACTTTGGCGGAACGGGCCGCCCAGAAGTTAAACCTCAACGTGGAGCTGGTGCGCACCGGCACCCTCTACCACGACA
TCGGCAAGATGTTGCAGGCCCGCTACTTCATCGAGAACCAAATGGGCGGCCTCAACCCCCATACGCAACTGGACGATCCC
TACCGCAGCGCCCAGATCATCAAAGCGCACGTCAGCGATGGGCTGCGCCTGGCCAAGCAATACAATCTGCCCACCGCCGT
CCAAGCTTTTATCCCTGAGCACCAGGGGACGATCCTGATTGCTTACTTTTACCATCAAGCCCAGATGAAAGCCGGAGATC
AACCGGTGCCCGAGGAGCCGTTCCGCTACGATGGCCCCATCCCCCAGAGCAAGGAGACAGGGGTGGTGATGCTGGCCGAT
GCCTGTGAGGCGGCCCTGCGCAGCATGACCCTGAGCGACGGCTTCGGCCCTGAGGTGGTTGAGCGGGCTAAGGCCGTTGT
CCGCAAAATCGCCCAGGCCCGTTGGCAAGATGGCCAACTGGTCGATAGCGGTCTGACGCTGCGGGATCTGGAGGTGGTGG
CAGACGCTTTTGTGGAGGTGTGGCGGGAATCCAACCACGAGCGCATTCCCTACCCCAGTCCTGCCCCTGCCCTGCCCTCG
CCTGAGTCCGACGCTGCCCAGGCCCAGATGCCCGTGCTGATGACTCCTTCAACGGGATCTCCCTAG

Upstream 100 bases:

>100_bases
GTATGATCGGGCAGATCACGATTGGCGACTAGGCTATCTCCTGGGCTAGGGGAGCAAAAGGGGATAGAAAAGAGAAGAAC
GCTGCCAGGCAAATCCTTCT

Downstream 100 bases:

>100_bases
CCTCGGCGAGCTGAGTAGGTCGAGAAAAGTCTAGTCCCAGAGCTCATCCATCGGTACGATAAGGGATCATTTGCGCCGGT
GGCGCGTGGCGCTGTTGCGA

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 821; Mature: 821

Protein sequence:

>821_residues
MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT
QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET
AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV
PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE
VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR
LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV
VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI
ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP
YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD
ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS
PESDAAQAQMPVLMTPSTGSP

Sequences:

>Translated_821_residues
MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT
QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET
AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV
PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE
VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR
LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV
VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI
ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP
YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD
ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS
PESDAAQAQMPVLMTPSTGSP
>Mature_821_residues
MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGSRSPQTFLAPAAAEIEDVEAT
QARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIRQEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRET
AIGTPSTAPPFPAQRRPEQLPPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV
PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQRRELQGLVYQWLQQVLIPNLE
VDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPEIFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQR
LQPGLRRRDRVLILMVSLTAPLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV
VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVALGASPYLERLFDLATPIRLI
ELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNLNVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDP
YRSAQIIKAHVSDGLRLAKQYNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD
ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEVWRESNHERIPYPSPAPALPS
PESDAAQAQMPVLMTPSTGSP

Specific function: Unknown

COG id: COG1480

COG function: function code R; Predicted membrane-associated HD superfamily hydrolase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011624
- InterPro:   IPR011621
- InterPro:   IPR003607
- InterPro:   IPR006675 [H]

Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]

EC number: NA

Molecular weight: Translated: 89719; Mature: 89719

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGS
CCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
RSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIR
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRETAIGTPSTAPPFPAQRRPEQL
HHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQR
CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
RELQGLVYQWLQQVLIPNLEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCEEEEECCHHCCH
IFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQRLQPGLRRRDRVLILMVSLTA
HHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEEHHHHHH
PLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV
HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVA
HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECHHHEE
LGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNL
ECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
NVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDPYRSAQIIKAHVSDGLRLAKQ
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD
CCCCHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHH
WRESNHERIPYPSPAPALPSPESDAAQAQMPVLMTPSTGSP
HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCC
>Mature Secondary Structure
MRNPLTSPVQRWSRRPQAASSRKAQPPLSERVVGYALALLSLTAVHGIRYYNEPQLTVGS
CCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
RSPQTFLAPAAAEIEDVEATQARQAEARRRVVQALKINSAANESMRQNLEALLAAVEAIR
CCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QEAGPLPYVSVQLLSLPTQIYLRQLPPEEWEALQAAVRETAIGTPSTAPPFPAQRRPEQL
HHCCCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PPDQRARQELVQVWQRAWLDGAATQTAATDPYTQLIAQVEAAQQRYQGALPSLEQLTPPV
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
PATVLNLTEADWQHLQNLSRRVLERLQKIGIVDGLPREVRAEGIQAQLDDLAFPGSAAQR
CHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH
RELQGLVYQWLQQVLIPNLEVDPQRTEQRIRAELEKVEPVLISVAENQVIVRVDQVITPE
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHEEECCCCEEEEECCHHCCH
IFLILDHFGFTQRRINIWGLVGVAGVMGLGLAVFVPLQQRLQPGLRRRDRVLILMVSLTA
HHHHHHHCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEEEHHHHHH
PLLAALFKLEFSSLPAVGLLLGSFYGAGLGLVVVVGQALFLPLVSAANLLTFVPLLSGSV
HHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VACALAGRSRSREELALLGGGAAAVQMLTYAAASLTTTGGIDLLAMALGGGITLGWSIVA
HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECHHHEE
LGASPYLERLFDLATPIRLIELSNPNRTLLRRLAAEAPGTFQHTLFVATLAERAAQKLNL
ECCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
NVELVRTGTLYHDIGKMLQARYFIENQMGGLNPHTQLDDPYRSAQIIKAHVSDGLRLAKQ
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YNLPTAVQAFIPEHQGTILIAYFYHQAQMKAGDQPVPEEPFRYDGPIPQSKETGVVMLAD
CCCCHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
ACEAALRSMTLSDGFGPEVVERAKAVVRKIAQARWQDGQLVDSGLTLRDLEVVADAFVEV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHH
WRESNHERIPYPSPAPALPSPESDAAQAQMPVLMTPSTGSP
HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]